RNA id: TU74226


Basic Information

Item Value
RNA id TU74226
length 234
lncRNA type sense_over
GC content 0.56
exon number 2
gene id AMCG00019880
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 535831 ~ 572827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGATCTGGTGTGGTagctgcaggacacacagagCTCGGCCGTGTCCTGATTTCTGTGACTGCAAAGGACGTGAAATAGACTTGACATATTTCTGATGGCGTTCAGGAGTGCGACAATGAGCTCGTACTGGTGCGCTGGGAAGGGAGATGTCATCGACAACTGGTGTCGCTGTGACCTGAGTGCCTTCAGCAAAGACGGCCTTCCCAACTGCAGCCCCCTGCTCCAGCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74186 lncRNA downstream 100958 445596 ~ 446868 (-) True G59324
TU74184 lncRNA downstream 164971 382652 ~ 382855 (-) True G59322
TU74144 lncRNA downstream 379803 167758 ~ 168023 (-) True G59283
TU74141 lncRNA downstream 448732 96833 ~ 99094 (-) True G59280
TU74236 lncRNA upstream 374933 932309 ~ 958515 (-) True G59362
TU74264 lncRNA upstream 707118 1264494 ~ 1264734 (-) True G59388
TU74266 lncRNA upstream 727049 1284425 ~ 1284745 (-) True G59390
TU74271 lncRNA upstream 789870 1347246 ~ 1347479 (-) True G59395
TU74272 lncRNA upstream 831969 1389345 ~ 1397225 (-) True G59396
AMCG00019878 mRNA downstream 66305 455460 ~ 481521 (-) True AMCG00019878
AMCG00019875 mRNA downstream 307693 235518 ~ 240133 (-) True AMCG00019875
AMCG00019881 mRNA upstream 24974 582350 ~ 593396 (-) True AMCG00019881
AMCG00019882 mRNA upstream 311685 869061 ~ 870896 (-) True AMCG00019882
AMCG00019883 mRNA upstream 387522 944898 ~ 945889 (-) True AMCG00019883
AMCG00019887 mRNA upstream 1317184 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019888 mRNA upstream 1356065 1913441 ~ 1920755 (-) True AMCG00019888
TU74284 other upstream 1027543 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 1766912 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 1897535 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 1937523 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 2474480 3031856 ~ 3034335 (-) True G59712

Expression Profile