RNA id: AMCG00019883


Basic Information

Item Value
RNA id AMCG00019883
length 603
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00019883
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 944898 ~ 945889 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGGGACCACTCTGCGCCTCGGCGCCTTCCTCCTGCCCGGGCTCTTATTCCTCCTGCTCGGGGTCTCCCTGCCCGAGACCTGCGCGGCCGGGGGAGCCCGGGGACCGGCGGTGCTGGCCGGGGAGAGGGCTGCGGAAAGCGACGTGGACAGCCCCTGCGAGATCAAGACGGTGACTGTGTCCACCCTGCCCGTTCTGCGGGAGAATGAGTTCAGTTTCACCGGGGGAGGCGCGGGGAGTCCGGCCAGTGGAGGAGGTGCGGAGTCCCGGCTGCTGCTCTTCGTCAGGACCGACTTACCTGGAAGCATCTCCGTCTTGGATGACCTGGACAACACCGCTCTCCCGTACTTTACTCTGGTTGCATTAGTTACAATGTTCCCACCGATGCTGTTGAGCAGCCGAGGCGCCCAGACAGCACTGTACCTGTGCAGAGCGGGCTGCACAGACTGGCAGAGCTGGCACTGCTCCGCCTGGGCGAAAACcaaagttaattgttttttaatcggGTTTGAAACTTTGGAGTTGcgattgctgctgctgctgcgcaTCGAGTCCATACACGACCCGAGCGGGGCTCTGGACCGGTCCTGCTGCAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74226 lncRNA downstream 387522 547826 ~ 557376 (-) False AMCG00019880
TU74186 lncRNA downstream 498030 445596 ~ 446868 (-) True G59324
TU74184 lncRNA downstream 562043 382652 ~ 382855 (-) True G59322
TU74144 lncRNA downstream 776875 167758 ~ 168023 (-) True G59283
TU74141 lncRNA downstream 845804 96833 ~ 99094 (-) True G59280
TU74264 lncRNA upstream 318605 1264494 ~ 1264734 (-) True G59388
TU74266 lncRNA upstream 338536 1284425 ~ 1284745 (-) True G59390
TU74271 lncRNA upstream 401357 1347246 ~ 1347479 (-) True G59395
TU74272 lncRNA upstream 443456 1389345 ~ 1397225 (-) True G59396
TU74279 lncRNA upstream 547797 1493686 ~ 1493973 (-) True G59403
AMCG00019882 mRNA downstream 74002 869061 ~ 870896 (-) True AMCG00019882
AMCG00019881 mRNA downstream 351502 582350 ~ 593396 (-) True AMCG00019881
AMCG00019880 mRNA downstream 372071 535831 ~ 572827 (-) True AMCG00019880
AMCG00019878 mRNA downstream 463377 455460 ~ 481521 (-) True AMCG00019878
AMCG00019875 mRNA downstream 704765 235518 ~ 240133 (-) True AMCG00019875
AMCG00019887 mRNA upstream 928671 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019888 mRNA upstream 967552 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019889 mRNA upstream 1159941 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019890 mRNA upstream 1214289 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019891 mRNA upstream 1265788 2211677 ~ 2212773 (-) True AMCG00019891
TU74284 other upstream 639030 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 1378399 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 1509022 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 1549010 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 2085967 3031856 ~ 3034335 (-) True G59712

Expression Profile