RNA id: AMCG00019888


Basic Information

Item Value
RNA id AMCG00019888
length 417
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00019888
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 1913441 ~ 1920755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTTCGCCCGCTGGAAGGTGAGGAACACGGCCATCGAGAGGAGGGACCTGATCCGCAATCCTGTCCCGTTGATGCCGGAGTTCCAGAGGAGCGTGCGCCTGCTGGGGAGGAGGCCCTCGACCCAGCAATTCATCGACACGATCATCAAGAAGTACGGGACCCACATCCTGATCTCTGCCACACTGGGAGggGAGGAAGCTCTTACCATGTACATGGACAAGAGCAAACTGGACAGGAAGATGGTCAACGCCACCCAGAGTGTGGAGGCCCTGCACCAGCTGGCCTCGTCCTACTTCATCGACCGCGACGGGACGATGAGAAAGCTGCACGAGATCCAAATTTCCACCAACGCAATCAAGGTTCGAtttctctctcctgcactcTGTCTTCACATGCACACAGATAAGACCAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74290 lncRNA downstream 251262 1605102 ~ 1662179 (-) True G59414
TU74279 lncRNA downstream 419468 1493686 ~ 1493973 (-) True G59403
TU74272 lncRNA downstream 516216 1389345 ~ 1397225 (-) True G59396
TU74271 lncRNA downstream 565962 1347246 ~ 1347479 (-) True G59395
TU74266 lncRNA downstream 628696 1284425 ~ 1284745 (-) True G59390
TU74365 lncRNA upstream 271579 2192334 ~ 2192547 (-) True G59484
TU74366 lncRNA upstream 275048 2195803 ~ 2205765 (-) False G59485
TU74368 lncRNA upstream 275048 2195803 ~ 2221194 (-) True G59485
TU74466 lncRNA upstream 654049 2574804 ~ 2575670 (-) True G59556
TU74817 lncRNA upstream 1569963 3490718 ~ 3491049 (-) True G59810
AMCG00019887 mRNA downstream 23572 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019883 mRNA downstream 967552 944898 ~ 945889 (-) True AMCG00019883
AMCG00019882 mRNA downstream 1042545 869061 ~ 870896 (-) True AMCG00019882
AMCG00019881 mRNA downstream 1320045 582350 ~ 593396 (-) True AMCG00019881
AMCG00019880 mRNA downstream 1340614 535831 ~ 572827 (-) True AMCG00019880
AMCG00019889 mRNA upstream 185075 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019890 mRNA upstream 239423 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019891 mRNA upstream 290922 2211677 ~ 2212773 (-) True AMCG00019891
AMCG00019892 mRNA upstream 306049 2226804 ~ 2247160 (-) True AMCG00019892
AMCG00019899 mRNA upstream 542881 2463636 ~ 2479709 (-) True AMCG00019899
TU74284 other downstream 327441 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 403533 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 534156 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 574144 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 1111101 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 1187046 3107801 ~ 3111347 (-) True G59720

Expression Profile