RNA id: AMCG00019889


Basic Information

Item Value
RNA id AMCG00019889
length 5675
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00019889
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2105830 ~ 2135939 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGTAGCCGGCTGACATAGCAAAACTAACCGTTCCCTTTCAAACGTCCACAGAAGCCCTGACCGCCTGCCAGCCTAAGGAACACAACTCTGACTCCTGGATCACCGTGATTGGAGAGGCGACGGGATGCTGGGGCAACTTTACTGATGCCAACGGCACGGAAGTTCACATCCTGACCCTGGAACTCAGTGAAAATGTGCCAATGCTAGAAAttaccatgaacattacaagtCCCACAACTCTGATTCTGAACAGCAACATTAATGCTACTATACTGGTCACTGCAAATCCACTTCTAAAAGAGATTCATcATTCAGCAAAActgattgtttatttacaaCCAGTAACAAAAAAGCAAGTGCAAGTCCCAGCCACAGACAATCTTTTAAACTGGGCCAAGCAGGAGTTTGGGGGAGTTACGTCTATGACAACAGTCTACGAGCCTGGCACAATCACATTTCATGGTGGCAAAGCTCAGGGTGGCTCAACAGAATGTGTGCCGCACTCCAGTATATTCCCAGCGACCCCCGTCACATTCACCTCTAAATATCAGTCCTGCTCTGACCAGCCACCCTCTCCGACACAGTCAGAAGTGCACATCCTCAACATACTGGATACCAGTGTGAATCTGAGGCGCATTTATCTGCACATCAGCTCCACCAAAGAAGTCAGTTTTATCCTGAGAAGCCCTGTCAGTGCAAGCTGGAATTTATATGGTGGAAGCAAGTTTGTGTCCAACACTGAAGTCTTCAttgaacaatttaattttactgcTCCATCAACTTTCAACCTCACAGATGACAACAGGGAACTTTGGGAATTTGCAAAGGACAAATTTTCAAGTGCATTCATCACCTCCTACAGTGAGATCTCAACTCATGGAAGAGTTTTGAGACTTTTCTTTAACAGGAAAGATGAAACATTGCCAACTCCAAGTAGCAGCATTGCCAGTTTACCTACTTTAACTACCAGCTCGGTTGAAAAGGGAGGCATTGGGATGCAGCTGTACCTCAACTCCGATTACACGGGTCCCATAGATGAGCAGACAAAGGTTAAGAGTGACCAGAAAATCTATGCAGAGATTACAGTTAAGGTTCATGGGGAGATTCCTGCCATCTTAAAGGTTACCAGTTGTTCTGTTCGTGCGAAAGCCCCTTGCGATGTGGTCAGGAACCTGCCCTTCCACTCTGAGCACTGCTCCCCAATGGTGTGTCCGTACAAGAAGAGGATCAGCTTCTCCTTCCACAATGTCCAGGAGCTTCCTGCAGTCCAATGGGAGGTGGAGTGCTCATCAGAGCTGTGTTTCGAGGGAAGGTGTGCAAAATTTCCACCAGCAAAGTCAAATCTGGAAGTCATCAAAACCTGTACCCCCTCCAAGCCGTGTTACGAGTTTGAGTTGCCGGCCGTCTTGGGAATAGCTTTCGGAGGATTCCTCATCGGGGTACTGCTCATCGGGGCGCTGTGGTACATCAAGGTTCGCACCGGCTATCCTGCTGGGCTGGACGTGGTCTCCAATAACAGCCACATTTCAGgATTCCCCTGTCCTTTGCTGAAAAGGCAGCCAGTGTCCCCCAACCCTTCACCGTCCGAAAACAGCAGTGCCAACCCCAGCATCGGCAGCACCCAGAGCACGCCAACCAGTAGCATGGCTTAGATTCAGCCATGGCCCAGGCGTCCATCAGCACAAGatgatgttttttatatttatatagggCACTTTTTTTGAGGTGACAGTGCCTTTGTAAAGAGCTTCACAGTCCACCACTCTCTTACTGGGAGTCCAAAGGGAGGACAGGCTAATCCAGCCTGACCATTCACTACCCAGCATCCGCACTCCTCTCTGGTGAAGCCAAAGACATAACTCAATGGAGACTcacaggaaaaacaaagcatatcCCTCAAGCACTAACAGGAAATTCATTGCATTCTTTCAATAAACCACGTCGCACCGACAGCAGCACCATAATAATCCCGAAAAGACAAAAgatgtacttttttttaacattattaggGACTTTTGTTTGCATCGTTGGCCACAACAACAGAACTTCGGAAATGTTAGCGCCAGCTTTTCAAAGCTGCCTAGCAACGGACAGGAAGTCAAACTTGGCTGACCGTTTTTACCGACAAagaacctttttttattattaatattgaaaaagaGGGTGGCTGGTAGCTAATCTTAGAGtaactcaaaataaaaatgtttaaaattaaatccccAATAAATTGATTTACGTCGGGAAATGAAAGCATCTTCAGTGTTGACCTGccaaattatttttagaaaacctCTACCTCTTTACTTGTGCAGTTACCTGATTGTGAAGTTTATGCTTGGCTTTGACAGCAAATCAAGGTCTGAATTCAGGTCTTTTTGGGGTTGAATCGTCTTTTATGGTTCAGACCTGGACACACACAAACCAGTGCCTTGGTCAGAGTATTGGTGTCCTCTCTGAGAAAACAATGTCAGTTCTTGCTGGGGACCGACAGAGAACACAGCCCTCTTCCAGTTCAGTCTGAACTATCAGCAAAAAACTAGTCAATCAACTTGGTACCTAAGCGACGTATTAAGGTTTTATGTCTAGTTGTCTTTTTAACAGATTGTAAATAACCATTACATGGACATTTGAGATTGAAAGAAACTGTTATAAGACCCTGATTCACCCCAAGCCAAAAATAACTGACCAGTATTTAGTCCGAATTCCCACAAAGTGTCCCCCGCACAATATTATGACTCTTTTCTAAAACAGCTCAGATGAACACCCAAATTCCTGCTGTAATATTACTAGGTTTCTAGCACAGTAATACTCAGTAGTTGAAATTGAGTGTAGTACAGAGCACTACTGTAGGTAGTTCAAAACCTTTAGCAGGAATATCATACAGATGTTGTTATTCCAACTCTTTCCCCCGATTTAgaatttgtgttgcatttacatTGTTCTAAAATACAATAACAGTTACTGACCAAGTATCAAATCCTCAAAAGGGGTATTTAGTAAGCAtcctgtgtatattttttacaagTTTAGCctaattgtttccttttatgTCAGACAATTAATGTGTGCTGGGGGACGTCTAGGAAAAAGGACTCCTCGAAATCCAAAGACCTAGGTTTTGATAGGTAACCAAATTAGTTTTTGATACTCATATCATATGATACTCTGCATAGCATAAAAGATgccccttattttattttatcccccCCACAACCCCTCCAAATATCAGccaagtactgtatatacagagtAAAAATGACCTACATATTTGGTCACCTAAACAAAAATGTAgctacttttatattttatgtgaaaGCTTTCCTATTGTCTATACTTTGTTTTGGGTGATTTGAAGGAATGTGTGAGTAtttgagtgcgtgtgtgtgtgtgtgcgtgtgcgtgcgtgtgcgtgtgtttgtgtattggtATGTGTGCACAGTGGTGGTAGACCggagaatgaaaaagaaatgaataatcAAGCCACTTGAGTTTGTgcaatacttttaaaacatactCTTATAAGTGAGTAACAGAATGTCTGAAGAGCTTATGTAGAAAGGGAACGCTATCCCCCCTCTGTTTTTCCTTCTTGCAGTGTCTTACTGTGACTGTGATTTGGCCGCACAAACATACTTCAAATTGGCGAACGCTGGGATTCCCAGCACGTGCTAATGTGAACGTTCAGTCTGTGGGAAAACGAATGCACACGATCAGGCCGCTGCTATGAAGGAGTGCAGTTGCTTTAATCGTGACATTTCTCACGCACTACAGATGAATAGGAATCAGCAGACAGACGCAGGGTGTTTGGAGCCTCTTCTCACGAGGTGAATGTAGAAGATCCTTAACCGTTTCATAGTCTGTTTACTTGCCTCTGCCACCAAAATCAAAAAGGCTGCCTGTAATGTATTGGCAACAGTTGAGTACCTTAACCAATCAAATCCACGATTCACGCACACATTAAAATCCTGGTTAGCGGTATCCAGactcatacatttttataaattatgtaaGGGGCAATAAACTGTGGATCAAATTAGGGGTACATCTGGGCTACGGTTCGAACGGGTGGAAAAGGGGATGCAAAAGTTTTGTTACACAACACAgttgaaaaaacacagatggaaAAAACCAAACCGCAGAATCAGAGATTTTATAATCTGGACCGTATGCTTTGGACAGGCACCGTCTGTCCTCTCGGGAGAGATACAGTACCGCATAATCAATgattcagttaaattaaatgcacgtttccttttttctcacAGAAATGCAGTATCTCAGTGGGGAAATGGTCAAGGAACACAAGCAGGCTAGACAGGCCCTCAGCTTGATTGCTCAGACTGGTCCAAAGTTATCAACCCATGTCTCGTGTGATAGGGAGGTCTTCCAAAACGTGTGCCAATTAGTTACGAAAACGAATTCAAAGtatcactttatttatatatatatatatatatatatatatatattgcaataataataatacaatgtattgGGTCATGCATAGCAAAATACAGTTGTGAGTGTTCACTGGAGAAAGCTTTTAACCTTTCATTGATCAAGGGCTAGTAATGTTTTAAGCTCCAGGGTCCAGTGGAATGATGCTGCTGCTTCTACCAGAATACAGTCTCGGTGTCCATTAACACTATATGTATAGCAAAggctgttttttctctctttcaatgGGGCATTATACCAAGGGGTATAAAACATCCAAACATCTTTAACTGGCTGCCTGTTTTATTTCCCAGCTGCTCCCCCGCTGTCTGATGTTTAAAAACCTTGCCACTGCAAAACCGCTAATTAGCGCTCACTCCTGGGCAACACAAACATGGCATTTGCTAAACTTTGGAGGTTTACAAACTCGGTTGTGAAAACACAGAGGGGCAGACAAATAACTCAGACAGGGAAGACAGCGCTGGGAACTCTCTCCCCGAAAGAAAATCGGTCTGTCCCGCTTTCTCGCTTCAAGCTGTACAAGAGATCACACTTCAGCTCTGATCTGAGCACTACAGGGACCTCCCACGTACTGCCTTTATGTTTTAGTTGCTCCCTGATCCTATTCATATTAcacttacttttattttgtatttctaatttatttattggccaAGCACCAGCACACACAATCAATACCCATAATCTGAAGTGGTTatactttgtatatatatagcacCCCGCAGAACcttgttaaacacacacatattgagAGGCGCAGTTCTCTgaagttatttttgtgtttatcaaTTAGGAAAATACAGTAATGTCCCAATCACATGGTCTGGACTAGCcgtatatatttatcaatactATGAATTGATTACCCTACTGTATCCATTAAAAACCAAATGGTTTACTCCCAGAGTCTAGCACATCTTATTATGAAAGACACTTCTGGAGTTGTGTAACTGTAACCTGTATTGTCTTCAACATGTGTGTTCTTTGTAAAGCCTGTAAATTATAAGTTGACCAAATTTAAATTTAGCAAATATtgttaatctgtttttgtttaaagtatATGTATGTTGTATATTAACTGTCTGAAATAAAAAGGAACTTAGTATAACTCATAAAAGACTTCTTATCTTACTATTGGGGAATGCTTTTTCATGGTCTGGCACAGAAGGAAATGCAATGCATGCTGCACACTGTaaacttcacacacacaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74290 lncRNA downstream 443651 1605102 ~ 1662179 (-) True G59414
TU74279 lncRNA downstream 611857 1493686 ~ 1493973 (-) True G59403
TU74272 lncRNA downstream 708605 1389345 ~ 1397225 (-) True G59396
TU74271 lncRNA downstream 758351 1347246 ~ 1347479 (-) True G59395
TU74266 lncRNA downstream 821085 1284425 ~ 1284745 (-) True G59390
TU74365 lncRNA upstream 56395 2192334 ~ 2192547 (-) True G59484
TU74366 lncRNA upstream 59864 2195803 ~ 2205765 (-) False G59485
TU74368 lncRNA upstream 59864 2195803 ~ 2221194 (-) True G59485
TU74466 lncRNA upstream 438865 2574804 ~ 2575670 (-) True G59556
TU74817 lncRNA upstream 1354779 3490718 ~ 3491049 (-) True G59810
AMCG00019888 mRNA downstream 185075 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019887 mRNA downstream 215961 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019883 mRNA downstream 1159941 944898 ~ 945889 (-) True AMCG00019883
AMCG00019882 mRNA downstream 1234934 869061 ~ 870896 (-) True AMCG00019882
AMCG00019881 mRNA downstream 1512434 582350 ~ 593396 (-) True AMCG00019881
AMCG00019890 mRNA upstream 24239 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019891 mRNA upstream 75738 2211677 ~ 2212773 (-) True AMCG00019891
AMCG00019892 mRNA upstream 90865 2226804 ~ 2247160 (-) True AMCG00019892
AMCG00019899 mRNA upstream 327697 2463636 ~ 2479709 (-) True AMCG00019899
AMCG00019913 mRNA upstream 553963 2689902 ~ 2690317 (-) True AMCG00019913
TU74284 other downstream 519830 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 188349 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 318972 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 358960 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 895917 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 971862 3107801 ~ 3111347 (-) True G59720

Expression Profile