RNA id: AMCG00019898


Basic Information

Item Value
RNA id AMCG00019898
length 651
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00019898
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2414864 ~ 2416601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtacTGTATTAGAGTTGTGCGGTTTCTGTTTAAATCCTTTGCTGTGGAAGCGGGCATAAGCGTCCCCCCTCAGGCTGCAGAGGAATGCGGAGCGGGCCGCCAGGCCGCAGAGGTAGTAGCCCCACCACGCACCGCCGCTTCCTTGCGCTGGTGGCCACCGGATGACGCGGCGCTGCGCCCCTGGGCCGCACCGGCTCTCCTCTCTGCCTGGGGCCCCCCGTACTCGCCCATGCCTGTAATCCCCATCCCCCGGCGGGTGCGCTCCTTCCACGGGCCCCACACCACCTGCACGCACTCGGCCTGCGGGCCCGTCCGGACAGCCCAGCTGGTGCGCACCAAGTACAACAACTTCGACCTGTACCTGAAGTCACGCTGGATGTACGGCTTCATCCGCTTCCTGCTCTACTTCAGCTGCAGCCTGTTCACCTCCATGCTGTGGGTGGCGCTGTCCGCCCTCTTCTGCCTGCAGTACTGCTGCATCCGCGTCTTCCTGCGCTTCCAGTACAAGCTGTCCAttgtcctgctgctgctgggccaCCGGCGCGTGGACTTCAACCTGCTCAACGAGCTGTTCATCTACAGCATCCACGTCACCATGTTCCTGGTGGGTGGCCTGGGCTGGTGCTTCATGGTCTTCGTGGACATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74348 lncRNA upstream 233795 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 247424 2164521 ~ 2167440 (+) True G59460
TU74340 lncRNA upstream 251260 2161935 ~ 2163604 (+) True G59459
TU74319 lncRNA upstream 380070 2034561 ~ 2034794 (+) True G59440
TU74302 lncRNA upstream 617723 1796926 ~ 1797141 (+) True G59425
TU74467 lncRNA downstream 167093 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA downstream 167093 2583694 ~ 2588069 (+) False G59557
TU74500 lncRNA downstream 298927 2715528 ~ 2716915 (+) True G59578
TU74548 lncRNA downstream 371309 2787910 ~ 2788239 (+) True G59625
TU74563 lncRNA downstream 408990 2825591 ~ 2826637 (+) True G59638
AMCG00019893 mRNA upstream 63841 2340788 ~ 2351023 (+) True AMCG00019893
AMCG00019894 mRNA upstream 87529 2274379 ~ 2327335 (+) True AMCG00019894
AMCG00019886 mRNA upstream 829242 1585023 ~ 1585622 (+) True AMCG00019886
AMCG00019885 mRNA upstream 1286174 1124534 ~ 1128690 (+) True AMCG00019885
AMCG00019884 mRNA upstream 1305868 1074816 ~ 1108996 (+) True AMCG00019884
AMCG00019896 mRNA downstream 26650 2443251 ~ 2454771 (+) True AMCG00019896
AMCG00019897 mRNA downstream 65304 2481905 ~ 2483959 (+) True AMCG00019897
AMCG00019895 mRNA downstream 68356 2484957 ~ 2488944 (+) True AMCG00019895
AMCG00019900 mRNA downstream 81347 2497948 ~ 2509657 (+) True AMCG00019900
AMCG00019901 mRNA downstream 105927 2522528 ~ 2544749 (+) True AMCG00019901
TU74243 other upstream 1336801 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 1969334 441598 ~ 445530 (+) True G59305
TU74774 other downstream 824838 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2407212 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2939171 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2941863 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3766111 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062178 True 3218 lncRNA 0.40 2 NC_007116.7 71899924 ~ 71904297 (-)
grasscarp (Ctenopharyngodon idella) CI01000059_08476398_08477421.mRNA True 2040 mRNA 0.42 2 CI01000059 8475067 ~ 8477575 (+)