RNA id: AMCG00019899


Basic Information

Item Value
RNA id AMCG00019899
length 2058
RNA type mRNA
GC content 0.60
exon number 16
gene id AMCG00019899
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2463636 ~ 2479709 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCTCCCCATCCCCGCAGCCCGGCAGCGTTGCAGAGCAGGAGACCCGGACAGACGCCCGTGCTTCAGTGTCCGTCTCAGGAGAGGAGATGAAGTTCGCCGAGCACTTGGCTTCTCACGTCACCCCAGAGTGGAGGAAGCAGTACATCTGCTATGGGTCGGATCGCAAGGTGAACTTTGCCGCGATGGCAGACTGCAGATACCCTACTGTCCTTGAGTGGCAACACAGGTCTCTCCAGGAGGCTTTCTTCCAGATGTGTGACCATGAGCTGGCCAAGGTCAATCTCTTCTACTCTGAAAAGCTGGCTGAGGTGCAGAGGAGGCTGGCCGCAGCGAAGGCTGAGATGGAGTCAGCCCGGGAGGAACAGAGAAGGAAAACTCCTGGTACCAAGACCAGACGGTTTCTGAGGGCCTACAATAAAGCTGGCAAACACAAGACCTTGCAGGACCTCAAACTGGCCTTCAGTGAGTTGTATCTGAGCTTGACCCTGCTGCAGAACTACCAGGAGCTGAACTACACCGGCTTTTGTAAGATCATAAAGAAGCACGACAAACGCTTTGCATCGGTGCGTGGCCTGGCCTGGCGAACAGACATCCTGGACGTCTCCTCTTTCCACACCAGCAAGAAAATCCCCCAGCTGGTCGCCGAGGTGGAGtcacagatgtgcgaGCTGGAAGGGGGAGACCGCGAGAGGGCGATGAAGAGGCTGCGTGTGCCACCCCTGGGGGCAGAACAGCCCGCCCCCGCGTGGACCTTGTTCCGGGTGGGGGTGACCTGCGGACTCCTGCTGGCCCTCCTGTCTCTCATCGGGCTTCGGGTCTTGCAGGCACCCGACTGGTCACTCCTGGGGTCTTTGCTGCGGTTCTACAGGGGCGGCTTCCTGTTGATTGAGTTTCTTTTCCTGCTGGGAGTCAACATCTACGGCTGGAAGCGGGCAGGGGTCAACCACATCCTGATCTTTGAGCTGGACCCCAGGAAGCACCTGTCTCATTACCATGTCTTGGAGTTGGCAGGGACGCTGGCTGTGTGCTGGTGCACCAGCGTGCTGATGTGCCTGCACAGTCCCCTGGCTCCGATCCCCCTGCAGCTGAACCCCCTGATCTTCTACGCCTTCaccctcctgctgctgctcaaCCCCACGTCCACCTGCTACCCCCATGCCCGTCGCTGGCTCCTCACACTGCTGCTCAACAGCCTGAGTCCCCTGTTCCTGGATCTCTGGTCCCTCCTCTGCTTCTACGTCTTCGAGGTCAACTGGACGGACCTCGAGGCCTTGAACACACCCCCTGCAGAGAGGCTGGACTGTGGGCAGTACTCCCCAGGCCTGACCTGTGCGATTCAGTGCTTCCCTCCCTGGCTGCGGTTTGCCCAGTGTCTGCGGCGCTTCTGGGACAGCGGGAACACTGGGCCGCACCTGCTGAACGCGGGCAAATACTCCACCGTGTTCATCATGGTCACCTTTGCCAGCCTCTACAGCGTGGCCACAGAGCGCCCCCAGCTGGCCCCGGGGGTCAAGCCGTACCTGTACCTGTGGGCAGTAGCCACCTGCATCAGCGTCCTCGTCACGGTGAGCTGGGACCTGCGCATGGACTGGGGGCTGCTGCGGGGGCCCAGTCTGCTGAGGGAGGAGACCGTGTACGCGCAGCGGGCCTACTATTACTGCGCCATGCTGGCTGACGTGCTGTTGAGAGTCTCATGGGCCATCAACATCATCTTCGCCCAGATGAGGGACTCTGATGCTGCCATCGTGGTCACCAGCGTCCTTGCCCCCCTGGAAGTCATCCGaCGCTGCGTGTGGAATTTCTTCCGGCTGGAGAACGAGCACCTCAACAACTGCGGTGAGTTCCGCGCAGTCCGGGACGTCTCCGTGACCCCGTTCAGCCCCGGGGGCCACGCCGCCCTGGAGTGCATCATGGACAGCGAGGACACGGCCAGGGATCATGGGAGAAAAGCTACCAGGAGGACCCTCTTTTCCATCACTCGTCTGAGAGCCAGACCCAGGGAAGTGAAGCTGTCCATGGAGGGGACTGAGGAGGAGTCCCTAATGCACCAGTAA

Function

GO: NA

KEGG:

id description
K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74368 lncRNA downstream 242442 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 257871 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 271089 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 801457 1605102 ~ 1662179 (-) True G59414
TU74279 lncRNA downstream 969663 1493686 ~ 1493973 (-) True G59403
TU74466 lncRNA upstream 95095 2574804 ~ 2575670 (-) True G59556
TU74817 lncRNA upstream 1011009 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 1117496 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 1160329 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 1166330 3646039 ~ 3647334 (-) True G59826
AMCG00019892 mRNA downstream 216476 2226804 ~ 2247160 (-) True AMCG00019892
AMCG00019891 mRNA downstream 250863 2211677 ~ 2212773 (-) True AMCG00019891
AMCG00019890 mRNA downstream 278441 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019889 mRNA downstream 327697 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019888 mRNA downstream 542881 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019913 mRNA upstream 210193 2689902 ~ 2690317 (-) True AMCG00019913
AMCG00019914 mRNA upstream 225620 2705329 ~ 2705778 (-) True AMCG00019914
AMCG00019912 mRNA upstream 230253 2709962 ~ 2742168 (-) True AMCG00019912
AMCG00019911 mRNA upstream 292860 2772569 ~ 2781304 (-) True AMCG00019911
AMCG00019919 mRNA upstream 331642 2811351 ~ 2825112 (-) True AMCG00019919
TU74395 other downstream 136221 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 877636 1584919 ~ 1586000 (-) True G59408
TU74449 other upstream 15190 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 552147 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 628092 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 686528 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 698332 3178041 ~ 3183066 (-) True AMCG00019942

Expression Profile