RNA id: AMCG00019904


Basic Information

Item Value
RNA id AMCG00019904
length 2030
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00019904
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2658045 ~ 2663160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACAGCACTGAATCACAGCTCCTGGTCTCGAAGAAACGCAGCGACGTGCGGGGCGGGGGTGCGCGGCGCTGCGTGCGCTTCACACGTGTGAGGCCGCCGACGTCATCAAAGAGCGAcgcggacacacacacactcgggGCAAGATGGCGGTGGACATGCGATTGCCGAGCGCTCGGGAGCGGGCCGCGGACTCCCTGTCTGCTGCCGAGGGGAGACACCTGGTCGCCCCTGGGGATGTCATCACCACAGACACGGGCTTCATGAGGGGCCATGGGACCTACATGGATGAGGAGAAGCTGACCGCCTCGGTGGCCGGAGAGGTGGAGCGGGTCAACAAGCTCATCTGTGTCCGACCTCTGAAGACCAGGTTCAACGGAGAGGTCGGGGACGTGGTGGTCGGCCGGATCACAGAGgTGCAGCAGAAGCGCTGGAAGGTGGAGACCAATTCTCGTCTGGACTCGGTCCTGTTGCTGTCTGCAGTCAACCTCCCGGGGGGGGAGCTGaGGAGGCGATCGGCAGAGGATGAGCTGACCATGCGGGACTACCTGCAGGAGGGAGACCTCATCAGTGCGGAGGTGCAGTCGGTGTTTGCGGACGGGGCGCTGTCTCTGCACACCCGCAGTCTGAAGTACGGCAAGCTGGGCCAGGGGGTGCTGGTGCAGGTGTCCCCCTCCCTGGTGAAGAGGCAGAAGACGCACTTCCACAACCTGACCTGTGGCGCCTCGGTCATCTTGGGCAACAACGGCTACGTGTGGCTGTACCCCACCCCCGGGCAGCAGGACGAAGAGATGGGGGGCTATTACACCAGCCTAGAGCCGGTGTCCCTCATGGACAGGGAGGTGATCTCCAGACTGAGGAACTGCCTGCTGGCTCTCTCTGCCCACAAGGTGCTCCTGTACGACACCAGCCTGCTCTACTGCTACGAGGCGTCGCTCTGCCACCAGATCAAAGACATCCTGAAGCCGGAGGTGATGGAGCAGATTGTAATGGAGACCCGGCAGCGGCTGGCCAATCAGGAGGGGTAGAGGCGGCGGTGGGGGGAGCCCGGCACTGCAGCCgatccccctccctctccctgccgGGGCCACGCAGCCCGTCACCGCCGCCTCCCCGCCCGAGCCCCCGTCACGCCCAGACAACGACCGGACGGTGGAGCGGCAACCTGACGCCGCACCGTCCCTCTGAAGAGTCTGACCGTGCCCAGCTGAGCTCGGTCCGAAGTCCGCTGGCGTGTCACGGGGAAGCGTGGGAATCTGCGGCTGTGTCGGTCAGCGCTGTGCCGGGACCCTCTCGGCTGCAGCAGTGACTTGCTCCTGTAGTGGAGGAAGCAACGTTTATATCTGACGCTGTctttattgtatatttctaaGGAGTAGTTGTAAATCTGAATACCTGCGGAGGTCTGTGTTGCATGTGTGTCCCGTCGCTGAGACGGGGAAAGACCCTCGACTCCGGCCTGACCCGAAATCCAGACCATCCGGACGCTCGGACACGTTGATCTCGCCTCGCACCCGTTGCTGTTGGTGCTTTGATAGATATGAAGACGACGCCCATTTCGTGAGCTGTGCATTAGTGTCAGATTAATCCTTTCTGCTCAGAGATGCGTCCAGAACAGACGTCGGCAGTTTAGTCGCCTCGGCACGTCGAGATGTTCCATCGTTTACACTTCCTCAGATTAACTAGtaatagaaatgtatgtattcaaatgCACAGCTACTCCTgcgaaatataaaatgaaactcAGATATAAATGGGTCACCTGAACGTGCGCAAACTCGGCTTCGTGCCACAAAACTGGGAGAAGAAATACTGGAGCTGATTGCCGGCAATTGAGTAGcaattgtgatgtatttttaacaaacctgttttctgcattttcaatttcttcCTGAATAAACGATCAACGTGATCAAAGACTGCACTCTGTGAGTCGGAAAAACGCAATCAGAATCACTGCATCACCAACGTGATCCACCGATGACttttatatgcatttcagaaaccataaaaacacatttataaataaaaa

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000178 exosome (RNase complex) cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03679 RRP4, EXOSC2; exosome complex component RRP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74467 lncRNA upstream 23915 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 69976 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 476976 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 490605 2164521 ~ 2167440 (+) True G59460
TU74340 lncRNA upstream 494441 2161935 ~ 2163604 (+) True G59459
TU74500 lncRNA downstream 52368 2715528 ~ 2716915 (+) True G59578
TU74548 lncRNA downstream 124750 2787910 ~ 2788239 (+) True G59625
TU74563 lncRNA downstream 162431 2825591 ~ 2826637 (+) True G59638
TU74574 lncRNA downstream 220554 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 299348 2962508 ~ 2969578 (+) False AMCG00019920
AMCG00019905 mRNA upstream 2012 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019906 mRNA upstream 21800 2632245 ~ 2636245 (+) True AMCG00019906
AMCG00019908 mRNA upstream 26380 2620970 ~ 2631665 (+) True AMCG00019908
AMCG00019909 mRNA upstream 40115 2611694 ~ 2617930 (+) True AMCG00019909
AMCG00019902 mRNA upstream 86328 2567816 ~ 2571717 (+) True AMCG00019902
AMCG00019907 mRNA downstream 3545 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019910 mRNA downstream 79541 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019916 mRNA downstream 127613 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019917 mRNA downstream 189049 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019915 mRNA downstream 206545 2869705 ~ 2876818 (+) True AMCG00019915
TU74243 other upstream 1579982 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2212515 441598 ~ 445530 (+) True G59305
TU74774 other downstream 578279 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2160653 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2692612 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2695304 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3519552 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile