RNA id: AMCG00019907



Basic Information


Item Value
RNA id AMCG00019907
length 660
RNA type mRNA
GC content 0.60
exon number 3
gene id AMCG00019907
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2666705 ~ 2670013 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGCAGCAGCCGGGGAAAGCTCTCGGGGACCAGAGGAGACCAAGTCTGCCGGCTCTGCACTTTATCAAGGCAACCAAGAGGGAGTCGTCGCGGCATGGAGCCCAGCACTGCAATGTGTTTGTAGAGCATGCAGGAAGAGGAATCattgtggtggggggtgggggggtgagagGATGTGGCTCCCTGTTGCTCCAATTCCCCCGTTCTCGGGCACGAACGCCGGCCCGACTCCACTCCGCACCCCTGACCCCTGATCCGACTCCTCTGTCCCACGCAGACCAGGAAACGCGCGACCTCTTCTCCTCTGGCGCTTTCCTGGACTCGGTCCCGATCTCTGCTGCAGCAGCGGCAGCGAGAAAGCAACACGATAATGTGGAAAAGGCCAAGCGGAGAGAAAGCGGGCGCTGTAATGAGCTCGGCAGTGACCCCAACCAAAGGTTACAATACGAGCGACCTCTTACTGCGCCGGGGGGGCAGATGGGGGTGTCTCATGTTACAGCAGTGCACCGAGAGGATACTTTGGGGGGCGTTGGGCTGCAGGAGCCGGCATTGTTGTCCGACGGCACGTCAGAGGAATTCACTTCGAGATTCAGACGAGGAAGTCCGAGATCGTTTCAGCACTTCGTACGGCTACAGGGCGCCGTGCTGGCCGATTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74467 lncRNA upstream 32575 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA upstream 78636 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 485636 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 499265 2164521 ~ 2167440 (+) True G59460
TU74340 lncRNA upstream 503101 2161935 ~ 2163604 (+) True G59459
TU74500 lncRNA downstream 45515 2715528 ~ 2716915 (+) True G59578
TU74548 lncRNA downstream 117897 2787910 ~ 2788239 (+) True G59625
TU74563 lncRNA downstream 155578 2825591 ~ 2826637 (+) True G59638
TU74574 lncRNA downstream 213701 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 292495 2962508 ~ 2969578 (+) False AMCG00019920
AMCG00019904 mRNA upstream 3545 2658045 ~ 2663160 (+) True AMCG00019904
AMCG00019905 mRNA upstream 10672 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019906 mRNA upstream 30460 2632245 ~ 2636245 (+) True AMCG00019906
AMCG00019908 mRNA upstream 35040 2620970 ~ 2631665 (+) True AMCG00019908
AMCG00019909 mRNA upstream 48775 2611694 ~ 2617930 (+) True AMCG00019909
AMCG00019910 mRNA downstream 72688 2742701 ~ 2768063 (+) True AMCG00019910
AMCG00019916 mRNA downstream 120760 2790773 ~ 2810001 (+) True AMCG00019916
AMCG00019917 mRNA downstream 182196 2852209 ~ 2866964 (+) True AMCG00019917
AMCG00019915 mRNA downstream 199692 2869705 ~ 2876818 (+) True AMCG00019915
AMCG00019921 mRNA downstream 240231 2910244 ~ 2918881 (+) True AMCG00019921
TU74243 other upstream 1588642 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2221175 441598 ~ 445530 (+) True G59305
TU74774 other downstream 571426 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2153800 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2685759 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2688451 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3512699 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile