RNA id: AMCG00019908


Basic Information

Item Value
RNA id AMCG00019908
length 1710
RNA type mRNA
GC content 0.60
exon number 15
gene id AMCG00019908
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2620970 ~ 2631665 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCCGTCGCGTTTATCTCCAGACCCGTCTCCCCTCCTTCACTGCGGTCCAGTGGTGCCACCCGACCTGTGCCCAGATACAGACCGCTGCTCAGTGCTGCCCTAGACCCTCCTGAGAAATGGGGATCTTGCCCggctctctTAGGTAACCAGCTCGGAGCAATGGTACATCAAAGGGCTATTATGACGGAAGACTTCAAAGTGCCTGATAAAATGGTTGGATTCAGTAAGTACACCTGGCTTTGTGGTTTTGGCGGGGTGGTGGTGGGTAGGTGGGGCGGGTGGTCTCTACGGCACCTCCGCCCCATAACGGTCGAGGTAGATttaggaggagagagagggcagtgCGAGGAGACGGGGATCGAAATGGTTACGCTGATCTGGAGGGTCGGGGCGAGAACGAGACTTATCGGAAGAGGGGGAGAACAGATCACGAGAATCCAGCTGGAGTCCGGCTGCAAGATCCAGATTGCGGCAGACAGCGGTGGCATGATGGAAAGACCCTGCACGCTGACCGGGACCCCCGAGAGCATCGAGCAGGCCAAGAGGCTGCTGGGGCAGATTGTGGACCGGTGTCGGAACGGACCCAGCTTCCACAGCGAGATGGATGGAAACAGCGCCATTCAGGAGATCCTCATCCCGGCCAGTAAAGTGGGGCTGGTCATCGGGAAGGGAGGGGACACGATCAAGCAGCTTCAGGAAAGAACGGGTGTGAAGATGATCATGATTCAAGACGGGCCCATGCCCACCGGCGCCGACAAGCCCCTGCGCATCACTGGAGACCCGTACAAAGTGCAGCAAGCCCGGGAGCTGGTGGTGGAGATCATCCGCGACAAGGATCAGGGCGACTTCAGAGGGGGCCGCAGCGACTTCGGGTCACGGCTGGGCGGCAGCAGTTTGGATGTGGCGGTCCCGAGATTTGCGGTGGGCATCGTGATTGGCCGGAATGGTGAGATGATCAAGAAAATTCAGAATGATGCCGGAGTCCGAATCCAGTTTAAACCAgAACTGGCCCGTATCGGGGCGTTTGACGATGGAGTAAATATGGGTCATCCCCAGGCCGGACTGGATCCCGTCTCCCTGTGGCTCCGTGGTGCTGACCTCCTCAGACAACTGTACGCTCAGGAGCGCGACGGATTCGGCGGTCCAGGGGGTCCCAGGGGCCGAGGCAGAGGCCGCGGAGAGTGGAACCTAGGGGCGCCCGGGGGTCTGCAAGAAGTGACCTACACGATACCCGCGGACAAGTGCGGCCTGGTGATCGGGAAAGGTGGAGAGACCATCAAGAACATCAACCAGCAGTCCGGGGCCCACGTGGAGCTGCAGAGGAACCCCCCGCCCAACACCGACCCCAACGTCCGGATCTTCTCCATCCGCGGGACCCCCCAGCAGATGGAGCTCGCCCGGCAACTCATCGACGAGAAGATCGGGGGCTCGGGAATGGGCGGAAGCAGTAGTTTCGGCCTGAACCCCTTCACTCAAGGACCGGCTACTCCACACCAAAACGGGCCGCAGACCTTCATGACGGGAGGGTGGGGCACTACGTACCAGACGTGGCAGCAGCAAGGCCAGCAGGACCCCAGTCACAATGGATCACAGACCGGACAGATGGACTATTCCAAAGCCTGGGAGAACTATTATAAAAAACTAGGCAAGTGCTGTGGAGAGCCGACTCCCGGTTACATCCAGCCAAAACAGAGAATCCGTTAA

Function

GO: NA

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74468 lncRNA upstream 32901 2583694 ~ 2588069 (+) False G59557
TU74348 lncRNA upstream 439901 2180603 ~ 2181069 (+) True G59467
TU74341 lncRNA upstream 453530 2164521 ~ 2167440 (+) True G59460
TU74340 lncRNA upstream 457366 2161935 ~ 2163604 (+) True G59459
TU74319 lncRNA upstream 586176 2034561 ~ 2034794 (+) True G59440
TU74500 lncRNA downstream 83863 2715528 ~ 2716915 (+) True G59578
TU74548 lncRNA downstream 156245 2787910 ~ 2788239 (+) True G59625
TU74563 lncRNA downstream 193926 2825591 ~ 2826637 (+) True G59638
TU74574 lncRNA downstream 252049 2883714 ~ 2885416 (+) True G59646
TU74584 lncRNA downstream 330843 2962508 ~ 2969578 (+) False AMCG00019920
AMCG00019909 mRNA upstream 3040 2611694 ~ 2617930 (+) True AMCG00019909
AMCG00019902 mRNA upstream 49253 2567816 ~ 2571717 (+) True AMCG00019902
AMCG00019903 mRNA upstream 56572 2562954 ~ 2564398 (+) True AMCG00019903
AMCG00019901 mRNA upstream 76221 2522528 ~ 2544749 (+) True AMCG00019901
AMCG00019900 mRNA upstream 111313 2497948 ~ 2509657 (+) True AMCG00019900
AMCG00019906 mRNA downstream 580 2632245 ~ 2636245 (+) True AMCG00019906
AMCG00019905 mRNA downstream 19272 2650937 ~ 2656033 (+) True AMCG00019905
AMCG00019904 mRNA downstream 26380 2658045 ~ 2663160 (+) True AMCG00019904
AMCG00019907 mRNA downstream 35040 2666705 ~ 2670013 (+) True AMCG00019907
AMCG00019910 mRNA downstream 111036 2742701 ~ 2768063 (+) True AMCG00019910
TU74243 other upstream 1542907 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 2175440 441598 ~ 445530 (+) True G59305
TU74774 other downstream 609774 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2192148 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 2724107 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 2726799 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 3551047 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile