RNA id: AMCG00019918


Basic Information

Item Value
RNA id AMCG00019918
length 2531
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00019918
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2826323 ~ 2833406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTCTATAGCAATGATGCATTTCCGGATAACCTTTAACCCCTACATACAACTTCCGGTATTTTCGCTTTGCGGGAATCGCGGTCTGCGACACGCTGTGACTGTAATCATGGTGAACAAGaGGGAAGAAGCGCAGATCGTACCTGGGAGTGAAACCATCTCCCCCAAGAagcacaagaagaagaagaagaagaagaaagacgAGCAGATGGACAACAATGTGACGGGCATCCTTTTAGAAGTGAATCCCTCCTCCCCTCTGCTGTTTCTGGATGATGGCGAGGACTTTGTTGTGCCGGACGAGCAGGAGACAGGGGTGGCGATGGGGGCGTCTGAAGACGGAGAGGGGCGGGAGCAGGGGGTGGCTGCAAAAAAGCACaaagccaaaagaaaaaaacgggAAGCAGAGGGAGATGTTGAGCAGCTGGAGGATGTGGACTTATCGGTCCTTTCGGGCGGGCTGGAGCCAACGcccaagaaaaataagaaaaaacatagAGATGGGGTCGAAAATGTTGACCTAGAAGTGAATGGGGaagtggtggaggaggaggaaattaagaagaagaagaaaaagaagaaaaggcacCCAAGTGTGGCTGCCAAGGCGGAGCTGGGAAACGGCGGGTATTTGGACACTTTGTCCGAGACGCTGGTGTTTAAGGAAGACCCAGAGCTCGAGGGGGAGACACAGGTGTGGGTGGACCCCCGAGAGATGCCAGAGGACCAGTGGCAGAGGCGGactgagctggagcaggcgggGGCGGTGGTAAGCTGCAACATTGTGTCatcagaaaagaagaagaagaagaggaagaaaaaagagcAGCAGGACGCAGGGAATGAGGACCAGGGAATGAAAAACATGAAGGAAACGAGGAAGAACCAGCAGACCATGATTGAGCTGTGTTGGGAATCtgggaagaagaagaggaagaagcagcagcagcaggaggaagaggaagagcagCCGAATGCAGGGAGTGCGGACCAGCAGACCGCAATGGGGTTCTGTGTGGAATctgggaagaagaagaagaagaggaagacgAAGGAGCACCAGGAGGCGGAGGAAGAGCAGCAGAAAGCAGGGAGTGCGGACCAGCAGACCGCAATGGACTTCGGTGGTGAATctgggaagaagaagaaaaagaagatgaaGGAACGGCAGCTGCAGAAGGAGGAAGAGCAAGAGCTGCCAAATGCAGGGAGTGCAGAACTGCAGGCCGGATTCGATTTGTTTTGGGAATCTGGCGTCGATAGCGACGTTGAAAGAAAGAAGGTGAAGGTCCAAGAGCACAACATGGAGAGATACATCGCCGAGCTCAAAGAGTTCATCCCCAATGTGGAGCAGAGATGCCACAGTGACATCATTAGGATGGTGGTGTACGACCTGGACCGGTTTAGGCAGTTCAAGCAGCAAGGAATTGCCATCAAGCGTGGAAGATACAGCGTGCAGGAGAACGATCTTCTCCGCCGGAACGTCTTGGACTTCCTCCTCCTGACGGGGCTGGACAGTCCGACCAAGCTGTTCTTTCCTTCGCGATACCCAGAGGAGAAGGCCATGATCAAGAATCTGAAGACGAAGCATAAATTCCACGACCAGATTGCGGTCGACATTCCCAGGCCTTGGCACGACATCTACTCGAGGGGAAGGAAGATCTTTGACTCCTTGCACTATAAGGGCAGGTTCTCCAGTAAAGATCTGGACATGCTGAAGAAGCTCCACACCATGTACGGCAACAACTGGAGCAAGATCTCCGAGTCCAGCAAAGGTGAATGGACCGAGACGGAGCTCACGCGTCTGGTGAAGGCCATCAGGGAGTATCTGGTGTCCCAGCTGGACCCCGAGGAGGCTGCCAAGGGGCAACACGCCACCATCCCCCGCGAGAAACTCTACAAAAAGATCCCATGGACAGAGGTGGCCCTCAAAGTGAAAACACGCAGCTGGACCAAGTGCCGGGTGAAGTGGATGTCCGTCCTAAAGGCCAGGATGTCGTTTGGGCAGAACTTGTATAAAGGCCTGCAATCGTTTCAGGccaaaataaacttaattgaaAAgttGCATGCACTGGAAGTTGAAGATGTCTCGGACGTGAACTGGGACGACCTTACGGACACCATTGGGGACGTCCCTCCCTCCTATGTCCAAGCGAAGTTCTACAAGCTGAAGGTGACCCAGGTTCCTCTGTGGCACACCATGTCTTTTGCGGATATTGTGGACCATCTCTACTACAAAACTCTCCCCGTCCTCAAAGCGACAGTTTCGCGGATGGTACCCTGTTCAGACGGCCCTGCTGTCCAGAATCTGGATACCTACCTGTTGTCGGACATTTTCCACGAGGACTTCTTGGCGGACGGCACTTTAAATGAGCTGCCAGAAGACAGTCTGTTGGGGGAGGATGACGGCCTGCCCGTGAAATGGTCTGATCCTGAATTCAGCATGTGAAAACGGGGCTCCTCTAGCTGCGCATGTTTCTAATCTGGGCACCCGCCGTTTtcctatatacagctctggaaaaaatgaagaga

Function

GO: NA

KEGG:

id description
K15225 TTF1; transcription termination factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 250653 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 605129 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 620558 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 633776 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1164144 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 657312 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 763799 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 806632 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 812633 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 837617 3671023 ~ 3675014 (-) True G59852
AMCG00019919 mRNA downstream 1211 2811351 ~ 2825112 (-) True AMCG00019919
AMCG00019911 mRNA downstream 45019 2772569 ~ 2781304 (-) True AMCG00019911
AMCG00019912 mRNA downstream 84155 2709962 ~ 2742168 (-) True AMCG00019912
AMCG00019914 mRNA downstream 120545 2705329 ~ 2705778 (-) True AMCG00019914
AMCG00019913 mRNA downstream 136006 2689902 ~ 2690317 (-) True AMCG00019913
AMCG00019923 mRNA upstream 50874 2884280 ~ 2909373 (-) True AMCG00019923
AMCG00019922 mRNA upstream 87635 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019927 mRNA upstream 137438 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019928 mRNA upstream 200985 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019933 mRNA upstream 278689 3112095 ~ 3129430 (-) True AMCG00019933
TU74449 other downstream 319303 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 345524 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 498908 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 1240323 1584919 ~ 1586000 (-) True G59408
TU74667 other upstream 198450 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 274395 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 332831 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 344635 3178041 ~ 3183066 (-) True AMCG00019942
TU74813 other upstream 646376 3479782 ~ 3480109 (-) True G59806

Expression Profile