RNA id: AMCG00019923


Basic Information

Item Value
RNA id AMCG00019923
length 2632
RNA type mRNA
GC content 0.61
exon number 22
gene id AMCG00019923
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2884280 ~ 2909373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGATGGCAGACGATGGATTACTGTTAAACATCAGTGCCGACGCCGGACCCCAAGGCTTTACCGCTGCAAAGAAGAAATTTAAGCTCTCTGATAAATGGaAAAACCGAAAAGCCCAAAAACGCCAGGCGCAGAATGGAGGAGAAGGCCCGGCGCCCTTCAAGCGCAAAGTCAGTGCGCCTCCTCCCACTGAGCCGCCCTCCAAACCCCAGGCCGGCACCCCTCCCCGGCGTGAGAAACCCCAGGGCGAGAAACCCCAGGGCCCAAGGAAGGTGGTTAAGGTCTCCACGAAGAAGACCGCCGGGACCCCACAACCCCGTCCCAAGACCAGCTCGGAGGACAGAGCCCCAGAGGACAGGCCTTTCGTCAAGACCTCCTCTCTCTTCAGAAACAACCCCGACATCCCCGACATCAACAGGCCTGTGGTGGTCCAGCTGAAGGAGAAGGTGTTCACCAGCGATTCGTTCAGCGCTCTGGAGCTTCACCCCCACCTGGTCTCCACTCTCAACAACGTTCTCCAGGTGTCCAGCATGACCAGTGTCCAGCGACTCGCCATTCCCGCACTGCTGGCCGGCAGGGACGCCGTGATTCGCTCCCAGACCGGCTCAGGTAAAACCCTGGCGTATGGTATCCCTCTGGTTCAGTCCCTGCAGGCGGCACAACCCAAAATCACGCGCAGCGACGGGCCGAGGGCTGTCATCGTGGTGCCCACCAGAGAGCTGGCACAGCAGAGCTTCCAGATCATCCAGAAACTGCTGAAGCCCTTCACCTGGATCGTACCTGGAGTCCTGATGGGGGGTGAGAAACGCAAATCGGAGAAAGCCAGGTTGAGAAAAGGCATCAACATCCTGATCTCCACGCCGGGCCGCCTGGTCGACCACATCAACAACACCCAGAGCATCAGCTTCTCCGACGTCCACTGGCTCATCCTGGATGAGGCGGACCGGACTCTGGACCTGGGCTTCGAGAGAGACCTGACTGTGATCCTGAACGCCCTCAATGCCGCTGCTTCCCACAGACAGACCGTCCTGCTGCTGGCTGGCATCACACTGAAGGAGCCGGTCAGTGTGCAGGTGTCTGAGGCCGCCTCCAGCGGGCAGACTGAGGGggctgtgacctctgacccctcgTCCCTGGGCATGTCGGAGAGCTTCGCGGTGCCGGAGAAGCTGCAGCAGCACGTGGTGATCGTACCCAGCAAGCTGCGCCTCGTCTGCCTGGCCGCCTTCATCCTGGGCAAGAGCAAGTTGGAGGAGACCCACAAGATGATCGTGTTCGTGTCCAGCTGCGAGGCCGTGGAGTTCCTGCTGTCTCTCTTCAACTCGGTGCTGTCCGGGGGTCCGGGGGGCCCGGGAGCGAAGCTGGCCCTCATGAGACTGCACGGCAACATGGAGCAGGAGGAGAGAACCGAGGTGTTCCAGAAGTTTTCCCAGACCAAGTCCGGCATCCTTCTCTGCACGGACGTGGCGGCTCGCGGGCTGGACCTCCCTCAGGTGACCTGGATAGTGCAGTACAACCCCCCTGCCTCTCCGGCAGAGTACGTTCACCGCGTGGGCCGCACCGCTCGCATCGGCGCCCGTGGCAGCAGCCTGCTGTTCCTCACCCCCTCGGAGACCCCCTACCTCGACGTGCTGGCCGATCACAACATCAGCATGTCCGAGACGAAGGTGGAAGACATCCTGACTGCCCTGGCGCTGGAGCACAGGTTCAAAGGCAGGGGGAAGTACGATAAGAAGTCTCCCGGGGCTGCGCAGCAAGAGTTGCGGGAGCGGGCCACGGTGCTGCAGGCCGAGTTTGAGAACGTGGTTCATGCCAGTGCGGAGAGCCACATCTTCCACATCCGCACCCTGCACCTGGGCCACACCGCCAAGAGCTTCGGCCTGAGGGACGCCCCTCAGGGCCTGGGCACCGGGCTGGGAAGGGGCCATGCCAGCAAGACCGGCACCAAGGCGAAGGACAAGAGACCCCCCAGGAAGCTGAGCAGCAAACAGCGGGAGGCCGGGCTGCTGCGCTCGGAGTACGCCAGCGGTCAGGAGGGGGAGGTCCTCAGGAAGGCCAAGAAGCGCAAGAAAGCGGGCCACCAGAAAGCCAAGAAGCGGATGCACCCGGGGATCTGGTGGCTGCGGTGGCCGGGCGCCCTCGGTTCCCAGACGCTCTTGTCACCTCTGTCAACCTCATGCAGTAAATGCACTCTCACCCATCGTCTTATACGTGAAGCTCAGGATGCAGACGGCGTGGAGTTGATTTATACTCCAGACAGGACTAGGCGTCCATCAGCGGCCCGTCTCCCCCCGTGCCGCTGTACCGAGACCCGCACGGTGCTGGCCTCCCGCTCGCCGCGGCGCTGGGCGTCGTTCAACGCATGTTTTTTGCCCATGGTGGAGTTTTATCAGCGGGCTGCCGCTGCGAAGGCCACGACAGCAAgaaacaagtgtgtgtgtgtgagagtgtgtgtgtgtttgagtgtgtgtgtgagtgtgtatgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtttgagtgtgtgtctgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgagagtgtatgtgagagtgtgtgtgtctgtgtgtgagagtgtgtgtgtgtgtgtgtgtttgagtgtgtga

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K14806 DDX31, DBP7; ATP-dependent RNA helicase DDX31/DBP7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 308610 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 663086 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 678515 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 691733 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1222101 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 581345 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 687832 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 730665 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 736666 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 761650 3671023 ~ 3675014 (-) True G59852
AMCG00019918 mRNA downstream 50874 2826323 ~ 2833406 (-) True AMCG00019918
AMCG00019919 mRNA downstream 59168 2811351 ~ 2825112 (-) True AMCG00019919
AMCG00019911 mRNA downstream 102976 2772569 ~ 2781304 (-) True AMCG00019911
AMCG00019912 mRNA downstream 142112 2709962 ~ 2742168 (-) True AMCG00019912
AMCG00019914 mRNA downstream 178502 2705329 ~ 2705778 (-) True AMCG00019914
AMCG00019922 mRNA upstream 11668 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019927 mRNA upstream 61471 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019928 mRNA upstream 125018 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019933 mRNA upstream 202722 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019939 mRNA upstream 248911 3158284 ~ 3165762 (-) True AMCG00019939
TU74449 other downstream 377260 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 403481 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 556865 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 1298280 1584919 ~ 1586000 (-) True G59408
TU74667 other upstream 122483 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 198428 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 256864 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 268668 3178041 ~ 3183066 (-) True AMCG00019942
TU74813 other upstream 570409 3479782 ~ 3480109 (-) True G59806

Expression Profile