RNA id: AMCG00019928


Basic Information

Item Value
RNA id AMCG00019928
length 4353
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00019928
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3034391 ~ 3054507 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGACggatgaatacaaaataactcCACAGGCTTCTGGAGTCCCAGGTCTTGAGAACTCGACCCAGGAGATTGGTGAGGAGGTAGAGGAGGGAGCCATATACACCATCACCCTCAGAAAGGTCCAGGTCCACCAGGCGGCCAGCAAGGGCCAGCGATGGCTGGGGGTGGAGACAGAGTCAGCTCTGAGCCTGTACGAGACGTGCAAGGTGCGCACCATCAAGGCGGGCACCCTGGAGAAGCTGGTGGAGTACATGGTGTCAGCATTCAGAGGCAACGACTCGACCTACGTCACCATCTTCCTGTGCACCTATCGCTCCTTCACCACCACCAAGCAAGTGCTGGACCTGCTGCTCAACAGGTACGCCAAACTGCACCACCAGTCCAGCGTCGAGGGTTCCAGACTGACGCACGATGACCGCACTGAGCTGAAGAAcacTATCTCCTCTATCCTGGGTGCCTGGCTGGACCAGTACTCGGAGGATTTCTGGAAGCCGCCGGAGTACTCCTGTCTGCGCCGCCTCATCTCCTACCTGCACCTCAATTTCCCCGGCTCGGACCTGGAGAGGAGGGCCTGCAACCTGCTGGCACAGTTCCACCGGCGGCAGCTCCGCGAGCCCGAGCAGGAGGTGCTGGACCACAGCGCCTGCACCTTCACCATGCTGGAGGAGAATGGCTACGACGACGACCGGCCCGACTTCCTGTCCTTCTCCCCCGCGGTGGTGGCCGAGCAGTTCACGCTGATGGACGCGGAGCTGTTTAAGAAGGTGGTGCCGTACCACTGCCTGGGCAGCATCTGGTCCCAGCGCGACAAGAAGGGCAAGGAGCACCTGGCGCCCACCATCCGCGCCACCGTCACCCAGTTCAATTGCGTCACCAACTGCGTCATTGCCACCTGCTTGAGCGACAAGGGGCTCAAGCCCACGCAGCGTGCCAAAGTGGTGGAGCGCTGGATCGAGGTGGCCAGGGAATGCCGGATCCTGAAGAACTTCTCCTCCCTGCGAGCGATCCTGTCAGCTCTGCAGTGCAACTCCATTCACAGGCTGAAGAAGACGTGGGACGAGGTCTCCAGGGAAAACTTCCGCATCTTTCACGAGCTGTCGGAGATCTTCTCAGACGAGAACAACCACTCCCTGAGCCGAGAGCTGCTCATCAAGGAGGGCACTTCGAAGTTCGCTACTCTGGAGATCAACCCCAAAAGGGCCCAGAAGAGGCATCAGCAACAGAGAGATCTGGGCGTGATGCAGGGCACCATCCCGTACCTGGGCACCTTCCTCACAGACCTGGTGATGATGGACACAGCCATGAAGGACTACCTGGATGGTGGATTAATAAACTTTGAAAAGAGGAGAAAGGAGTTCGAGGTCATCGCCCAGATCAAGCTCCTGCAGTTGGCCTGCAACAACTACAACTTCACTCAGGAGGGGCAGTTTGTGGAGTGGTTCTCTGGGGTGGACAGACTCACTGAGGCTGAGagCTACAGCCTGTCCTGCGAGATCGAGCCGCTGTCGGAGTCCGCCAGCAACACGCTGAAGGCCAAGAAGAACACGGGCATCATCAAGCGCTGGAGCGACCGGCAGCCCCCCAGCGCTGAGGCCAGCTGCAGCGCCGGCAGCTCCCACTCTAAGTCCTTCGAGCAGCTGCGCTACGGGCCCTTCCTGGGCGGGGGCAGCGGGGACGGCGGCGACTCGGTCAGCGTCACCTCGGCCGGCTCCAGCAGCTCCGACGTGGAAGAGATCAACATCAGCTTCATCTCCGACTCCCCGGAGTCCCACGAGAAGAAGttCTGGGAGTCCACGTCGCTGTCGTCGCTGGACACCTCGGGGATGGGCTCGGGCTCCAGCAGCGCCTCGTCGTCATCCATGTCCTCCACGCCGGTCAGCGCCTCCCGCTCGCACAAGCGCTCCGTGTCGGGCGTGTCCAGCTACTCGTCGCTGTCCCTGCCGCTCTACAACCAGCAAGTGGACGACTGCTGCATCATCCGCGTCAGCCTGGACGTGGACAATGGCAACATGTACAAGAGCATCCTgGTGACCAGTCAGGACAAGACGCCAGCGGTTATCAGGAAAGCCATGGTCAAACACAACCTGGACCGCGAGAGGCCGGAGGACTACGAGCTGCTGCAGAAGATCTCGGAGGAGAAAGAGCTGAAGATCCCAGACAACGCCAACGTCTTCTACGCCATGAACTCCTCAGCCAACTACGACTTCGTGTTGAAGAAGAGGGGCTTCCCCAAGGCCGGGCGTGCCAAGCACGTGGCCAGCTCCACCCTGCCCCGCATGAAGCAGAAAGGCCTGAAAATCGCCAAGGGCATCTTCTGAACACCCGGCCTCTGCCCCACCAACTGCCCCACCTGCCCCACCCGCCATCCCCCTTCCCTGCTgccagagaggagaggaatggCCGTCAGTAttacatgaacaaaaacaaactctgaCACTTAAAGAACAATGACAAAAAGACAGAAGGACCCTGTACAGACTGTGCAATACGGAAAGAGGTGTGCCTCACGGAGAGGCAAGCCGGAGAGCTCTTATTGTGTGCAGGGGCGCCATGTTTACAGGCCTTAGTGCCCAGCTGCCCATCTTTTTGGAGGGCAGGAACTAGGACCCTCATGCCTTTTCTGTGCCAGGTGTGAACTGATATTATTTGAGGACCCTTGGGAGGGTTTCCACGTGAAGGACTCGGCCGTCCCTGGAGTTCCCTGGGGAAGGGACAGTGGACATTACTCTGCCCACGAGAGCAGAGTCCCCAAGGTTGGTTCGGTAATGAGAGTCCAGGAAAAGGGGACGGGGCAACGTCCAGCCTGGCATCCAATAATCCTACTCCTCCCTCTGTGTGCGGCACTGACTCCGCACTGTCCCGCCCACCGACTTCGGTTTCGTTTCCCGAGCTCATCGGGAAAGAAGAGACTAGTTCCTCATAACACTAAACccccttttttttgtcttttgtaagcTCAAGAAACTCTATTTCAAACTCTGAAGACAAAGggttttgttttcgttttgttttttgtactggCCCACCCCAGCCaaagactgacagacagacctCCAAATGTGGACCTCTTGAGCTGGGCCTTACTGCTAAAGGGATTCCCCTTTTCCACATCAAAACCTGTCCCTTGTCCCACACAAGGATGGCTGACACTGATGTATAAAAATTTGCGGGACACCGTTGGGTGgataaaaaaggacaaaattCCCACCGGAGGAGGTGTCCCCGTCCTTTACAAATGAGTTAAACTGACACATTTACATCCACTACTTTTGTACAGTAAAGCAAGGGCATTATAACGAatcaatttttcttttctttttggttttgctAGACTCTTTTCCAAGTGGTGCTAACAGATGTTTGAAATCTGCTCATCCCGGTTAGAATCTCAGAGTCCTGTAGCGACGGTTTGAGTCGCattgcccccccaccaccacacacacactgaccacatTGGACAGGTCAGTGACCCCCTGTCGACCCCAGCAGTTTTTCCCAACACAACAGAAGAGAActgacttttttaaatgttgtctttCGTGCTTTCCAATGACTGACAGTGGGCAGAGTGAGCCAGGAGGCGTCCGCAGCGAGTCCAATGAGGACAGTCCAGGGAATCGAGCTCTGCCCGGGGCGTGGTTTCCCTCCTCTGGACGCTAGAGGGAGCCCCTCGCAGGCCTCGGTGATTTCCACACCAGCGAGAATTCCCGTCATCCTTCCTCGGGAGGAACCGGGCGCGGTGGCGGACATTTCCAGAACTGTCTGAAGGACTTCTGCTCAAATGCTGGAACTGCCTGCGACGAGGAGAGCAGCGCCCAAACGCACCCCACTGTCTTACTCTACGGTGAGAGGGAACGGGATCTGTTCgtagggttttgttttgggttttcttGCCCAACATGTATAGTTTTAAATGATGAATAAGGACTGTAGACGTACCCTGTTCACAGTTCCAGCCACTGCCTCCCCTTCAAGACTGTGACATGTTTAATGACCACACCTCCTCCCAGAACCCCCCACTCTGCTTTTCTGCAGCCCTCAGGAAAAATGCCTGTGAGAGTCGGGCAGGACACTAATAATCTGGACCTTGTCAAGATAAAACAACAGACTGTAAATGTGCTAAATCAGTTTAGGGGGAGAAACTGGAAACTGAACATGaaagaaacactgaaacacGAGACACTGAAAGAGGCCTCTGTTCATCGTGCTGAAAGCCATGTCCTCCCTTCATCTCCAATACAGGCAAAGGGGGCGTGTGGGACGTGGGGCTCTGGGGTTACTTTTACATGTGCCAAAGACCAGGGCGAGGGGGTGGGCAGCAGGTGCGCGTgtttatgtgtgagtgtgtg

Function

GO: NA

KEGG:

id description
K08732 RALGDS; ral guanine nucleotide dissociation stimulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 458721 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 813197 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 828626 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 841844 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1372212 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 436211 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 542698 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 585531 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 591532 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 616516 3671023 ~ 3675014 (-) True G59852
AMCG00019927 mRNA downstream 44521 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019922 mRNA downstream 91756 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019923 mRNA downstream 125018 2884280 ~ 2909373 (-) True AMCG00019923
AMCG00019918 mRNA downstream 200985 2826323 ~ 2833406 (-) True AMCG00019918
AMCG00019919 mRNA downstream 209279 2811351 ~ 2825112 (-) True AMCG00019919
AMCG00019933 mRNA upstream 57588 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019939 mRNA upstream 103777 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019942 mRNA upstream 116363 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019940 mRNA upstream 134150 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019943 mRNA upstream 140270 3194777 ~ 3201209 (-) True AMCG00019943
TU74667 other downstream 56 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 527371 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 553592 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 706976 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 1448391 1584919 ~ 1586000 (-) True G59408
TU74676 other upstream 53294 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 111730 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 123534 3178041 ~ 3183066 (-) True AMCG00019942
TU74813 other upstream 425275 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1957937 5012444 ~ 5061277 (-) True AMCG00019976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_02007718_02025670.mRNA True 3531 mRNA 0.49 18 CI01000010 2007507 ~ 2026254 (+)