RNA id: AMCG00019933


Basic Information

Item Value
RNA id AMCG00019933
length 4496
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00019933
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3112095 ~ 3129430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGTTCCTGCTGCTCGGTGAGGAAGTCAACATGTCGAGTTCATACAGGAGCAGGATTCAGGAGTTCAACGCCGCGCTTGGCGAGGAGAAGATCAGCCTCCATGCGCTGAGGGAGCTCTGTTTCAGCGGCATCCCTTTTGAAGGGGGCATTCGATCGCTCTGTTGGAAGATCCTGTTGAATTATCTTCCCCTGGAGCAGGCGATCTGGGACTCCTTCCTGAAGAAGCAGAGGGAGGTCTACGCCCAGTTCCTAAAGGAGATGATCATCCAGCCTGGAATCGCCAAGGCCAACATGGGGCTGTCCAGAGAAGACGTGACTATGGAGGACCACCCACTGAATCCCAACCCCGACAGCCGGTGGAACAACTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGATAAGGATGTCAGGCGGCTGTATCCAGACATGGCATTCTTCCAGCGGCCCACAGATTACCCCTGCCTGCTCATCCTGGACCCCCAGAACGACTACGAGACTCTGCGGCGCCGCGTGGAGCAGACCACCCTGAAGTCCCAGACCGTGGACCGGAACCGCAGCGGAGTCACCAACGTGGGCTCCCCGGGGAAGTCGCAGAATCTGTACCCCTCCAACGAGTATGAGGTGCTGCCCAACGGCTGCGAGGCGCACTGGGAGGTGGTGGAGCGCATCCTGTTCATCTACGCCAAGCTGAACCCGGGCATCGCCTACGTGCAGGGCATGAACGAGATCGTGGGGCCCATTTACTACACCTTCGCCTCCGACCCCAACAGTGAGTGGAAGGAGCACGCTGAGGCCGACACCTTCTTCTGCTTCACCAACCTTATGTCGGAGAACCGGGACAACTTCATCAAGAGCCTGGACGACTCCCAGTGCGGCATCACCTACAAGATGGAGAGCGTGTACTCCACCCTGAAGGAAAAGGACATGGAGCTCTACCTCAAGCTGCAAGAGCAGAACATCAAGCCGCAGTACTTCACGTTCCGCTGGCTCACGCTGCTGCTGTCGCAGGAGTTCCTGCTGCCCGACGTCATCCGCATCTGGGACACGCTGTTCTCGGACAAGGACCGCTTCGACTTCCTGATCCTGGTCTGCTGCGCCATGCTCATTCTGATTCGGGATCAGCTGCTGGCAGGAGACTTCACGATCAACATGAGGCTGCTGCAGGATTACCCCATCACCGACGTCCACCACATCCTAGCGAAGGCCAAGGAGCTTCAGGACGGGGCGTAGCCAACGGCACAACAGCACCCTGGGGCAGAACGGCCAGCCCGGCGACGACACGATCGGCAGCGCTCGCACAGTGCATCATGGGAGGAGAGGTCGCCACATTGCTGTGCATTGTGGGAGCTCCCCCCCACCACGGGGCCCAGCGCGCCTCTGCCCCTTCCCTTCGCACCGAGACGGTATTCTTATcaagctatttatttttgcactgaAGACttgaaaccaaaaaaacacctatcgcaaaaaatacagaaaaaaaagtctgaaattaCACAATATGGAAGAAAACACTCCAAGACTGTTATTTTCTAAATCCTAACAGGGTTCCTCTGGGCTGTTCTTTTAATAGAGTTTTAAcctctttctttttatgattttaatgttttgttttttaactctTCGTATTAAACcgatttcagttgttttttggCGAGCTAGTTGACTGCCAGCATTAACGCCCCTGGTTTGATTTACACGGCTCCTGCCAGGAGAGCGGTTCTCTGAGGCTTGAATTCTCCTCGGGTTTTAGCCATTGAGCTCAAATTGACCTTACTCTGTCCCCCGGTGTCTCCAGTAGTGGCAGAGCAAGGACTCAACTCGTCTTAATGTTTATTAGAAGCTACAGTCAATGCTGCACCCTTTACAGTACGCACCAAGTCATCTCAGTTGTGGCTCTTATTAAGCTGTCCTGTTATTAACCAATCTGATTCCCTTAGTCTGTTATCTTAGTGATGTCGTGCtcgtgagtgagtgagtgtgggtgtgctgggattgtttttatttacccCTTCTTTTTCTCAACGGAGTTCAGCCTAGGTTTATCTAGCAGATCCTAACTGTTTACCCAGAACCCGGTGTGTGGACCAGACCTCAGTTCTGCCGGGCAGGCTGGGGACGTTGTGCGAGTTCTGTGATAGAAGGATTTTTGTTGtatgtgtggttttgtttaccTGAATTTCTAGGCTCCCTCTAGTGGTGGGGAAGGAGAAAGAGCGCTCTCATCAATACGGTGATATTGGCACTTCCTTCTCTCATCTACTTAATAGTCAGGGTCTCCCCTCACAGATGCCTCCCTTGCTtttatatagacatatataaaAGTTGTCCTTAAATGCCTCGTAACAGACCTGTACAGGGACGGACTCGGGATCATGCTTTGAAAATGCTACAGTTAGGCTTAGTACTTGCTCAATATTCACTTCTGCCGTCCCTACCTGCCTCTGAAGGTGTAATTTGCTTTCTTAATCCCTGGCCACTTCTCAATTCCTTCCCATATGAAGGACGGTCTTCACACTGCAATCTGGAGAGTCATCTTGTTAGTCAAGTTGGTTTTATACCCagatcttttatattttatcagtgGGCCCATGGGAGGCAAGTAGTAGTGGTTCTGGAAGTACAGGAGGAAAGTAGAGGTAGTACAGGTAGAAAGCCTAGCTACAGTTCGGATTAGTAAATTTGCAAAGCATGATCTGATGTTCTTTGCCCTTATGGGTAATTTACAGAAAacgtatatttttttataaagataCATCTCTCTTTTTAGGCACACTGTAGATACTGTTGAACAAGTTGTATTGGGAGCCTGTTACCAGGAGAGCTACACAACTGGTACTACAGCTGGGAAGAGTCACCATGTGGGCAGGAAGTGCCATGGGGGGAATCCAATATCTAACACTCCTTCTCTGCTTCAACAAAATTAATTGTGGGAGCCCACTGTCTCCTGTTGTTGTCCGAGGCTCACTCACGCCAACCTCCTTCGGATTGCCTGGGAGGAACCGGCGTGTGACCGCAGTCGTAAAGCCTTCGCACAGCAGTGTCTCCCACGCACCGCACGCGTGCCAAGAATGTCAATCTACCCGCCTCGACAACATTGTCTTGTTTTGGTCGTTCAGTTTGCGTGTAATATCTGTCGAATGAGTTGTTCGGAAGCAGTGGCCTTAGTCAAAGATGTCACATTGTGCAGTTGGGCAGCGTTGATGATTCTGAAGACTTCCTCCTTCTCTTTGACCTGCCACCATATCCTTTAGCTAGAGCCTGGTTAAGTCCTTATCCAGACAGATCTGAATCCCAGCATCTCAAGAAGCTTTGTTCTTGCACAGTCTTACAGTACAAAACAATCGAGTAACAGAAGCATTACAGTCGGGAACTCTTTTGTAAAGCCAGTGTGTCTTAATGCCTATACATCTTATTCGGTCATGCTTTCAGTGACACTCGCCACTAAATCAGGTCTGCACCCTgcctttgctgttttttttttttgttgttttaatgtttgtgtgcgtgtaATTCTCTGTTGTTTTTGCTCATGTTTCTAGTTTCTGAGCCCGAGTACAAAGCTGATCTGCAATTAAACCTCTTTCTAAAAGTCAAAGCTGAGTCAGGAAGTGCAGAGGGGAAGCAAATCAGTGTCGCACCTGAACTGAAGAGGATTTCTGTGTCACACTCATTTCCTTCCCAGAGACACGGCTGAAGCTTCTCAAGACCTTTTACTAAAAGCATATAAGACACCGTGTTAAATCTAGGAACTAAGCACTGATAACACAAGAGATGGaaatacagcacacacagtAAGATATGCAAAAAAAAGTATCTACAGGTCATATCTGTATGGCATTATATATCCCAGATGGGAATTTCTCTTCAGCTTCTTTCACACTAGCACACCGTCCTGTGTAGTTTCATGTGACCCCACCTCCTTCCCCTGCCGTCATCCCGAAAGTGAAgtaaataatttgatgtttgcaAGCAGATGGTGCGGAGAAGCCTTGCGGTCACTTTCAGTTGACCGTGGCTTTGAAAAGCGGGCCGAGCACTAGGCCTGGAATAAGTTTGCACAGTGTGAATGAAATCTACTCCTTACACTAGATAGTTGTATTGTGTGTTATCCGTGTTTTTGATGGACTTTTCCCGAACATTGGAGAACcgtaggatttttttttttcttgtattgttAAAGCTATGACATTATGGTTTGTATGATTGCTTCTGACTAAGAAGGCGTTTATGAGGGATCTGTCTCTTACATATTTGCTTTGATCCATAGATGTAGATGTTGGTTTTATAGCTGCTGCTGCACTCAAGTATTATCATGGTTTGTCCTAGTTCTCCAGCCCTGTTATGAAAGATTTAAGTGCTATAACTGGCTGAGTTCTAAAGAATGTCTCTATTTCAGGTTTAAAGCCCTTTAGATAAGCGCAGTGAAATTTAtgtgctgtgtttttcattCGGCATCATCGTAAGATACCCTAGAAGCATCTGTTGTCC

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K24796 TBC1D13; TBC1 domain family member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 536425 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 890901 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 906330 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 919548 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1449916 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 361288 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 467775 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 510608 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 516609 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 541593 3671023 ~ 3675014 (-) True G59852
AMCG00019928 mRNA downstream 57588 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019927 mRNA downstream 122225 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019922 mRNA downstream 169460 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019923 mRNA downstream 202722 2884280 ~ 2909373 (-) True AMCG00019923
AMCG00019918 mRNA downstream 278689 2826323 ~ 2833406 (-) True AMCG00019918
AMCG00019939 mRNA upstream 28854 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019942 mRNA upstream 41440 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019940 mRNA upstream 59227 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019943 mRNA upstream 65347 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019941 mRNA upstream 78457 3207887 ~ 3211163 (-) True AMCG00019941
TU74676 other downstream 748 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 77760 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 605075 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 631296 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 784680 2324288 ~ 2327415 (-) True G59505
TU74745 other upstream 36807 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 48611 3178041 ~ 3183066 (-) True AMCG00019942
TU74813 other upstream 350352 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1883014 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2134484 5263914 ~ 5265925 (-) True G60118

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000211_00042408_00046095.mRNA True 2168 mRNA 0.48 9 CI01000211 42408 ~ 47110 (+)