RNA id: AMCG00019938


Basic Information

Item Value
RNA id AMCG00019938
length 606
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00019938
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3255212 ~ 3257837 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCCAGCCTGATCTCTAGCCCTCCCAAAGCAGACCGCCTGACAaaccctcctctctcccccgtCTCAGCAGAAGGCCTGAACTCCGACCAGAGCCTGACAAAGCGGAGGAAGAAGGAGCGGCGCAGTCGGACCACCTTTAACAGCAGTCAGCTGCAGGCGCTGGAGCGGGTGTTCGAGCGCACACACTACCCCGACGCCTTCGTCCGAGAGGAGCTGGCACGCAGGGTGAACCTCAGCGAGGCCCGAGTCCAGGTGTGGTTCCAGAACAGACGAGCCAAGTTCCGGCGGAACGAGAGGGCCGTTCTGGCCAGTCGCTCGGCCAACCTCCTCAAGTCCTACAGCCCCGACGTGGTCATAGAGCAGCCCGTGGCCCCCCGGCCCGCGCCCCTCAGCTCCGACTATCTCTCCTGGTCCCCAGCCGCACCTTACAGGTACAACACTCAACACCACGGCTCCAGGGGCCCACACACCGTGTCCTCGTACAGCTCGTCCAGCACGCCCACTGCGGGTCAGGGGGTCAACATGGCCAACAGCATCGCCAGCCTGAGGCTAAAGGCCAAAGAGTACAGTATGCACCAGAGCCAGGTGCCCACCGCGAACTGA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09329 PRRX, PMX; paired mesoderm homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 679542 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 1034018 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1049447 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 1062665 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1593033 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 232881 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 339368 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 382201 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 388202 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 413186 3671023 ~ 3675014 (-) True G59852
AMCG00019941 mRNA downstream 44049 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019943 mRNA downstream 54003 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019940 mRNA downstream 64217 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019942 mRNA downstream 69247 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019939 mRNA downstream 89450 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019945 mRNA upstream 65942 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019944 mRNA upstream 82965 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019947 mRNA upstream 238439 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019946 mRNA upstream 265451 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019950 mRNA upstream 417270 3675107 ~ 3706097 (-) True AMCG00019950
TU74745 other downstream 72146 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 72146 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 143865 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 220877 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 748192 2494899 ~ 2507020 (-) True G59545
TU74813 other upstream 221945 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1754607 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2006077 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 2018825 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 2033753 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile