RNA id: AMCG00019940


Basic Information

Item Value
RNA id AMCG00019940
length 996
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00019940
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3188657 ~ 3190995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAGTCTTGCTTCAAAGGACTCTTATCTTCAGAAATTGGGGAGCAAAGTTTGTGCGTCGCAGAGCCAGGAGCCTCGGAAAAGGCCTTTTGAGAAGAAGCCCGTGGTCAACACCTCAACCCAAGTGCACAGCAAGGGGCGGACAGGGGTGCAGGAGGGAGCCAAAGCGAAGCCCGAGAGTGGCTTAACTGTCAACAAGCATCAGGGGTCCAAAGGTGCAAAGACGACGACATCCAGCTCTTTTTATACTGTGGATATTCTGCGTCAAAGACTGCATGAGAAGATTGAGGAGAAACGTGGCAATGTGAAGTCCCAGGGGCTGTCGGCCGAGGAGCGGGAGCGGAAGCGCGCGCGCCGGAAACAGGAGAGGGAGCGCAAGAAGCGCAAGAGGAAGGAGATCCGCAAGAGGAAGCTGGCAGAGGAAGCGGGCGAGGGCCAGccagaggaaaagaaagaggacGAGGATGGAGCCCAAGCCAAGGATCCTGCTGGAGCCACGCCCAGAGAGGAGAGCACCCTGGTCTTCAACAAGGTGGACGTGAGCGCGGACTACGTGGACAAGGagcagcagaagaaggagaagaaaaagaaagtgaaggGCAACATCACGCCGCTGACCGGGAAGAACTACAAGCAGCTCCTTAGTCGGCTGGAGGCCAGGACCGCCAAGCTGGAGGACCTGAGGAGCAAGGACATGGGCAAGGCcaaggagctggaggagaagaTGAAGTGGACTAACGTGCTGTACAAGGCTGAGGGCCTGAAGATCAAGGACAACGAGGAGCTCCTGCGTGCCTCCCTGAAGCGGAAGGAGAAGAAGCGCACCCAGAGGAAGAAAAACTGGGGGGAGCGCAGTGAGCACGTGATGGAGAAGATGCAGCACAGGCAGGACAAGCGCCGCAAGAACCTCCAGAGGCAGAAGAGCAGGAAGGCAGAGAATCGCAAGAACAAAGCCCGTAAGAAGGGGCGCGTGTTACCCGAGGACCTGAAGTAA

Function

GO:

id name namespace
GO:0034708 methyltransferase complex cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 612987 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 967463 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 982892 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 996110 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1526478 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 299723 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 406210 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 449043 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 455044 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 480028 3671023 ~ 3675014 (-) True G59852
AMCG00019942 mRNA downstream 2692 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019939 mRNA downstream 22895 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019933 mRNA downstream 59227 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019928 mRNA downstream 134150 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019927 mRNA downstream 198787 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019943 mRNA upstream 3782 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019941 mRNA upstream 16892 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019938 mRNA upstream 64217 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019945 mRNA upstream 132784 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019944 mRNA upstream 149807 3340802 ~ 3379597 (-) True AMCG00019944
TU74745 other downstream 5591 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 5591 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 77310 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 154322 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 681637 2494899 ~ 2507020 (-) True G59545
TU74813 other upstream 288787 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1821449 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2072919 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 2085667 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 2100595 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile