RNA id: AMCG00019941


Basic Information

Item Value
RNA id AMCG00019941
length 786
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00019941
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3207887 ~ 3211163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTCTAACAAAAACTTCAGAAGACGGAGAGCAGATTCAGACGATGAAGAAGACGAAGAGACGACTGCAGAAGTCAGATCTAAACTGGATGAAGCCAAGGAGGTTCAGAGTCTCAGGAAAAGGCAGACTGGCGTGAGTGTGACGGCATTGTTGGTGGGTGAGAAGAGGCCGATTGACGCGGATATCGAGGATGATCCGTTTAAATTGAAGACGGGAGGCGTTGTGGAtatgaagaaaattaaagacCGGAACAGAGACATGACAGAAGAGGAGACCGACCTGAATCTGGGGACATCTTTCTCGGCGGAGACGAATCGTCGAGATGAAGATGCTGACATGATGAAGTACATTGAAACCgaactgaagaagaagaaggggcAGGTGGAGGCCGAGGAGCAGAAGGTGAAGGTGAAGAACGCGGAGGACCTCCTGTACGAGCTCCCGGAGAACATCAACGTGTCGTCAGCCAAGAAGACCGAGGAGATGCTGTCCAACCAGATGCTTAGTGGCATTCCAGAGATAAAGAACATAATTTTCACCGAAGAGGCCAAGGCCAAACTCCTGGCTGAGCAGCGAAACAAGAAGAAGGACAATGGCACCTCCTTCGTCCCCACGAACATCGCTAGGCACAGAGAGGAGCCCAAAGCCCGGCCACTCCGAGTGGGGGACACCGAGAAACCAGGACCCGAACAAACTCCTCCGAACCGCAAGAGGCCGGCCAACGAGAAAGCCACAGACGACTACCACTACGAAAAGTTTAAGAAGATGAATAGGAGATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 632217 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 986693 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1002122 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 1015340 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1545708 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 279555 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 386042 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 428875 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 434876 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 459860 3671023 ~ 3675014 (-) True G59852
AMCG00019943 mRNA downstream 6678 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019940 mRNA downstream 16892 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019942 mRNA downstream 21922 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019939 mRNA downstream 42125 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019933 mRNA downstream 78457 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019938 mRNA upstream 44049 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019945 mRNA upstream 112616 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019944 mRNA upstream 129639 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019947 mRNA upstream 285113 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019946 mRNA upstream 312125 3523288 ~ 3529636 (-) True AMCG00019946
TU74745 other downstream 24821 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 24821 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 96540 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 173552 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 700867 2494899 ~ 2507020 (-) True G59545
TU74813 other upstream 268619 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1801281 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2052751 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 2065499 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 2080427 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060614 True 1103 mRNA 0.43 9 NC_007116.7 33295678 ~ 33298352 (-)