RNA id: AMCG00019942


Basic Information

Item Value
RNA id AMCG00019942
length 1679
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00019942
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3166237 ~ 3185965 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTCACGCCAACTCCATGCACGCCGGATTGAGGGAGTGGACAAAAATATttgGTTTGATCATTTACCCATTGAAATCTACTCTGTTAAACAGTGAACTGATCCAGTGTCTttatgctttgtgtgtgtgtgtcctggaCAGGGTGGAGTTTACTAAACTGGCAGCAGACTACAAGGCTGTGAACCTGGGTCAGGGTTTCCCAGATTTCTCCCCCCCCGACTTTGTGAAGGAAGCGTTTGGTCGAGCTGTCAGTGGGGATTTCTCCCATCACCAGTACACCCATGCTTTTGGCCACCCAGCGCTGGTGAAAATCCTCGCCCAGTTTTTTCAGGGGAGTTTGGGCCAGGAGATTGACCCCAAGGACAACATCCTGGTCACTGTGGGGGCCTACCAGGCTCTCCACTGCACCTTTCAGGCCCTGGTGGACGAAGGAGATGAGGTGATCATTATTGAGCCCTTTTTTGACTGCTATCACCCAATGGTGAAGATGGCCGGCGGACGTGCAGTCTTTGTGCCTTTGAGACCGGGTTTGGCCACAATTCCCGTGTCTGCCTTTTACAGCCCTGAGAACCAGAAGGACTTTGAAAACTACATCAGGTTCTGCTTTGTGAAGGAGGACTCCACACTGAGGGCTGCCGAGAAGATCCTGAGGGAATGGAGTGTGAAGAACAGGGCCGTGGCCAGTCTTGAAATGGTGGAAttgaGAATGTCACGCAAACTCCACGCACGCCGGGTCGAGGGAATTACCACAGCTCTTTGGGTCAAGATTTTTAAACTGGCCGCAGACTACAAGGCTGTGGACCTGAGTTTGGGCTACCCAGATTACTGCCCCCCGGACTTTGTGAGGGAAGCTCTTGGTCAAGCTGTCAGTGGGGATTGGTCCCAGCATCAGTACACCCACGCTTTTGGCCACCCAGCGCTGGTGAAAGTCCTCGCCCAGTTCTTTCAGGGGAGTTTGGGCCAGGAGATTGACCCCCAGGACAACATCCTGGTCACTGTGGGGGCCTACCAGGCTCTCCACTACACCTTTCAGGCCCTGGTGGACGAAGGAGATGAGGTGATCATTATTGACCCCTCCTGTGGCTGGTATGAGTCAATGGTGAAGATGGCCGGTGGACGTGCAGTCTTTGTGCCTTTGAGACCGAAAGCAGGTCCGGAGGGGCTCCAGTCTAGCAGTCACTGGGCTTTGGATCCAGAGGAGCTGGCCGGTAAATTCACCCAGCGCACTAAAGCCATTGTGCTGAACACGCCCAACAACCCTCTGGGGAAGGTGTTCAAGCGGGAGGAGCTGCAGGTGATAGCGGACCTGTGTGTTAAACATGGAGTGGTCTGCGTAAGCGACGAGGTCTGTGAGGGGCTGATGTACGACAGAGCGCAGCACGTCAAAATAGcCAGCCTGCCGGGAATGTGGGAGAGGACTATCACGATCGGGAGTGCAGGGAAAACATTCAGCGCCACCGGACTGAAGGTGGGCTGGGCAATCGGTCCCGAGTCCATTCTGAAACACGTAAAATCTGTCCATGTGGTTTCTGTGTATAATTGTCCGACTACACCTCAGGAGGCTGTGGCCCGCTTGTTTCAGAGAGAACTGGAGAATTATGGGAAACCAGAAAGCTATATCCTCCAGCTGCCTCAGACACTCAATGGGAAACGGAAGAAGCTGGCTGATTCTCTAGTT

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 595200 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 949676 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 965105 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 978323 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1508691 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 304753 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 411240 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 454073 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 460074 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 485058 3671023 ~ 3675014 (-) True G59852
AMCG00019939 mRNA downstream 5108 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019933 mRNA downstream 41440 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019928 mRNA downstream 116363 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019927 mRNA downstream 181000 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019922 mRNA downstream 228235 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019940 mRNA upstream 2692 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019943 mRNA upstream 8812 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019941 mRNA upstream 21922 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019938 mRNA upstream 69247 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019945 mRNA upstream 137814 3323779 ~ 3327751 (-) True AMCG00019945
TU74676 other downstream 59523 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 136535 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 663850 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 690071 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 843455 2324288 ~ 2327415 (-) True G59505
TU74813 other upstream 293817 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1826479 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2077949 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 2090697 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 2105625 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile