RNA id: TU74744


Basic Information

Item Value
RNA id TU74744
length 2098
RNA type TUCP
GC content 0.42
exon number 4
gene id AMCG00019942
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3166237 ~ 3185965 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGTGGGAATGCAGCCCATCATGCCTGAGGGGGGCTACTTCATGATCGCAGACATTTCCACAATCAGGGTAGATCTGCAGGATCCGCACAATGCAGATGAGCCGTACGATTATCGATTTGTGAAATGGATGATTAAGAACAAGGGTTTGGCCACAATTCCCGTGTCTGCCTTTTACAGCCCTGAGAACCAGAAGGACTTTGAAAACTACATCAGGTTCTGCTTTGTGAAGGAGGACTCCACACTGAGGGCTGCCGAGAAGATCCTGAGGGAATGGAGTGTGAAGAAGTGAACGAGGTGCTGAAAACCTTCCCATGCTCCTGTTAGCAGCAGGGCCGTGGCCAGTCTTGAAATGGTGGAAGTAAGAGCCAATGGACAATAGTAACAACCCATTAATGTGCATCAGTGGGTTGATTCAGAATAGTTTAGAATGAACATCACTCTCACTACTGTAGCAGAGCTTGGTTTGTACTCCGAAATATACTGGATACACCTGCttttaaaagtgattttatttttgttgaagaCGACTCTGGCCTCTGTTTACAGTGTCGTCAGTCTGGCTCAGGCATGGGGATTATGTCTGTTCAGTATGATAATTTTGACATTGAAATCTACCTCTGTTTGATTGGACTGCTGTCAATCCTAAAGCAATCATGCACTCACTGCGATGATTTTTCTAAATGGAATTCAGATGGACAGTTCTTTgacaatggatttaaaacaagGTTGAAAACCATTTAACCTTCCCCATACATCCTATGCTACAACAGTGaaatattgttctgtttttgagCTGTTTATGTGTGTTGGAATCTCATCTAGAAAAAATTGAGTTTAATTAAACCATGGCTTCTAGTCTGCTAGATTGTTTCATACCCACCAATAATTTCAGATCTCACTGCGTTGCATGTAGGGATTTTGGCGTGTGCGTAAGGAAGAATATGGATTCACATGTGGTGCTTTTAGTACATAAAAACATAGGAAattgtccaatcgagaggaggccattcgccccatcgtgctcgtttggtgtccattaataaccgagtgatccaaggatcctatccagtctgtttctgaatgttcccaaattgtctcttcagccacatcgctggggagtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtattgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgatttcgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcaggtccctcagtctcagtctctaaaaagtgaaaaacctttatctaaattaaatctaaaaagaAATCTAAATCTCCGTGACATTATCCTAAGGTTGTGACATTTGAAATCACACCATACCTttagcacacagacacacacacacactcactcaccacccccctccccccatgcCGTTGGCACTAGGGTGACCGTACGTAGTCCCGGATTTTAAACGTCCCGCTGTACCGACAAATGACAGGCAGATGCTCAAGTATTGTTGAAAAATTCGCAATGAATACAATCACTAGCTGATCCATTGACAGAGGTGTCAGGGCATGttgttttaaaggaatcccatacaGAATAAAAGTTGATGTTATAGACGTGTGATTCatttaacactgaatttgtTAAAAATGGTTTGAGTAAGTTATGTGTTGCTGGTGTATTCATAAAACGATATGAATGTAATAGTTGTTCTTAAGGATATATgttgaaattaacttttttttttcaattttatttgtacCAATTccatatttttaagtgatgtgatttgttttattattattttttccaaaatgtcccggtttctacttttgaaaatgtggtCATTATCtggcacccccccccccccccccgccaaccCTACCCACCCGCTCTCAGTGGAGACCCCCCACACAAAAATCTAAtattaacaaatgaaaaaaatactataattcAAATATTGCAAACCTTTCAAATGCCTATCCCCGCACACAACCAATTATTCCATTGCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 602371 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 956847 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 972276 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 985494 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1515862 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 307652 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 414139 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 456972 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 462973 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 487957 3671023 ~ 3675014 (-) True G59852
AMCG00019939 mRNA downstream 12279 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019933 mRNA downstream 48611 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019928 mRNA downstream 123534 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019927 mRNA downstream 188171 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019922 mRNA downstream 235406 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019940 mRNA upstream 5591 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019943 mRNA upstream 11711 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019941 mRNA upstream 24821 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019938 mRNA upstream 72146 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019945 mRNA upstream 140713 3323779 ~ 3327751 (-) True AMCG00019945
TU74676 other downstream 66694 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 143706 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 671021 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 697242 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 850626 2324288 ~ 2327415 (-) True G59505
TU74813 other upstream 296716 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1829378 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2080848 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 2093596 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 2108524 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile