RNA id: AMCG00019944


Basic Information

Item Value
RNA id AMCG00019944
length 1779
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00019944
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3340802 ~ 3379597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCATGGAACTGATTTCCAGTGATGCTGATGGAGCCATACAGAGAGCCGGGAGATTCCGTGTGGAGAATGGCTCTTCTGATGAGAACACAGACTACACCCCGGGCACCTGGAGACGGACCGACGTGCATTTGGAGAATCCAGAGTACCACACCAGatggtattttaaatatttcctggGAAAAGTTCACCAGAACTACGTGGGCACCGACGCAGAGAAGAACCCCTTCTACCTGTCCGTTGTCCTCTCGGACCAGAACAACCAGCGCGTGCCTCAGTACCGCGCCATCCTCTGGAGGAAAACGGTCAGTGAGCGCCGGAACGCTGAAGATATGCCTTCCCTACAGCCCCACAAAAACGTTATCGGTGAAGTCGATTTTAAGGCAAGCTCTGAGTCGGCCATCGGAGATGCCGTCACGTCTCCCCCAGTGGTAACCCTGCATCCCGTAGCTACAAAATCATCTCATTTACTTTTCAGTGCCATGAACCTTGACAGATTCGAAAAGGGCCCCAGGGAAATCCTCAACCCGGAGATCCAGAAGGATCTGCTGGTTTTAGAAGAGCAAGAGGGTTCGGTCAACTTTAAATTTGGTGTCCTCTACGCCAAAGACGGACAGCTTACCGACGACGAGATGTTTAGCAATGAGACCGGAAGTGAAAGCTTTGACAAGTTTTTGAACCTGCTTGGGGACACGATCTCACTGCGAGGCTGGGCTGGCTACAGAGGAGGCCTGGACACCAAAAACGACACAACTGGTATAAACTCGATATACACCGTGTACCAGGGCCACGAGCTGATGTTCCACGTGTCCACCATGCTGCCCTACTCGAAGGAGAACAAGCAACAGGTTGAACGGAAGCGCCACATTGGGAACGACATTGTCACCATCGTGTTCCAGGAGGGCGACGACATGTCACCGTCCTTCAAACCGTCCATGATCCGTTCCCATTTCACACGTATCCTTTCAGAGCAGGCAAGAAACGCTGCCCACAACAAAGAACAGAGATTCCTCGCTCGTGTTGTCATTGTATACCGTGATGCTCAGTacgtttctgtgtgtgtttctcttgttGTGTTCAATGGGGGCAGGTTGAAGATATTTTCTGAAGAAAGTGTTCCGCTGTTCggccctcccctcccctcaccGCCAGTGTTTACAGACCATCATGAATTCAGGGACTTCTTGTTAGTGAAATTGATCAATGGAGAGAAGGCAACGCTGGAGACGCCCACTTTCGCTCAGAAACGCCAGCGCACTCTGGACATGCTGATTCGCTCCCTCTATCAAGACCTCATTCCCGACCTACACAAGAACATGCTGAACCGAAGATCATTCAGTGACGTTCTGCCCGAGTCGCCCAAATCAGCCAGGAAGAAAGAGGAAGCCCGACAGGCAGAATTTGTCAGGATAGGTCAGGCACTGAAGTTGAAGACCATTGTGCGAGGCGACGCTCCCACCAGTCTGGTTACTACAGGGTTGTGCAGGAAAGAACCTTGGGAATCCCAGTCGTTCTGCAGTAACTTTGCGTATGATATAGTCTGCAGTGACTCCTGGGGTCAGTCCTTGCTAATCGCTACAGATGCTGGCGTGATGCTACTGGATGATGTCCAGGTTCCTCCTGTTCAGGTCTTTGACAAAACCATGCTGGTGAAACAGATGCACATCCTCGAAGCCCAGGATCTGCTGATCGCCAGGACTGACAAAGGTAACCTAACTCTTCACCAAACTTCTGTCTCCCGTTCAGACGTGAATTTGACTGCTGTGGGAATCGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 765132 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 1119608 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1135037 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 1148255 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1678623 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 111121 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 217608 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 260441 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 266442 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 291426 3671023 ~ 3675014 (-) True G59852
AMCG00019945 mRNA downstream 13051 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019938 mRNA downstream 82965 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019941 mRNA downstream 129639 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019943 mRNA downstream 139593 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019940 mRNA downstream 149807 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019947 mRNA upstream 116679 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019946 mRNA upstream 143691 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019950 mRNA upstream 295510 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019949 mRNA upstream 343298 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019952 mRNA upstream 727400 4106997 ~ 4133823 (-) True AMCG00019952
TU74745 other downstream 157736 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 157736 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 229455 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 306467 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 833782 2494899 ~ 2507020 (-) True G59545
TU74813 other upstream 100185 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1632847 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1884317 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1897065 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1911993 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile