RNA id: AMCG00019945


Basic Information

Item Value
RNA id AMCG00019945
length 960
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00019945
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3323779 ~ 3327751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAATTTAAGGCGAGCCGTTACGGCCCGTGTGCGTTACTATAATAGCAACACGCTGCGGGCCAAGCAGTGCCTTTACATGCCAAAGATGCACGACACTTTACTGCACACCCCTGTCAAAAAGAAGTCCTGCTTCACAAAGAAACTGTTGTGCTTCcgtacatacaaaaataatgccACCACCCTGCTGACCGCATTGTTCCTGCAGGAGATCTGTCTGTGCGACTCGCCCATGGTGATGGCTCTAGTGGACGGTCCCACCGGGGAAAATGACAACATGATCTGCGTGGCCTACAAGCACCAGTTTGACCTGATCAACGAGAGCACAGGCGAGGCCTACCGGCTGCATCACGTCGAAGCCAACAGGGTCAATTTCGTGGCAGCCATAGACGTGTATGAAGACGGGGAAGCCGGGCTCTTGCTGTGTTATAACTATATATGTTATTACAAGAAGGTGTGTCCGTTCAACGGCGCCACTCCGATGATCCAGTCCACAGCCTCGGACTTTCACTTCAGCTGGAATCAGGTTCCCAATGCCATCGTCTGTGCGTTCCCGTATATCCTGGCATTTACGACCGACTCCATCGAGATTCGGCTCGTGGTGAACGGGAATCTCGTCCACACCGCGGTGGTGCCTGAGCTCCAGCTGGCCGCCTCTAGGTCGGATATTTATTTTGCCTCCTCTGCTGCGGTAAACGCTGCCTCCAATAGCAGCTCAAAGGAGACCAGTTCACAGAGCTCCCCGCAGACGCCCACCGCCTACGAGATGCCCATGTTCCCATCGCCCTTAGGAGATGGTAAGTTTGCCGCCAGTCACTCGTGCGTCGCAGGGATCTCGGTGACTGAACAGGCGGTTCACATAGCTTCGGGCTCTGCTGCAGAATCCAGCCACGCTGCTAAAACATCAGCATCTGCACTAATTCTCTCAGGGTCTGGCACCTTGAACTCTAACCCTTAG

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 748109 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 1102585 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1118014 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 1131232 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1661600 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 162967 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 269454 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 312287 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 318288 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 343272 3671023 ~ 3675014 (-) True G59852
AMCG00019938 mRNA downstream 65942 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019941 mRNA downstream 112616 3207887 ~ 3211163 (-) True AMCG00019941
AMCG00019943 mRNA downstream 122570 3194777 ~ 3201209 (-) True AMCG00019943
AMCG00019940 mRNA downstream 132784 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019942 mRNA downstream 137814 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019944 mRNA upstream 13051 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019947 mRNA upstream 168525 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019946 mRNA upstream 195537 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019950 mRNA upstream 347356 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019949 mRNA upstream 395144 3722895 ~ 3728526 (-) True AMCG00019949
TU74745 other downstream 140713 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 140713 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 212432 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 289444 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 816759 2494899 ~ 2507020 (-) True G59545
TU74813 other upstream 152031 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1684693 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1936163 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1948911 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1963839 5291590 ~ 5292673 (-) False AMCG00019992

Expression Profile