RNA id: AMCG00019949


Basic Information

Item Value
RNA id AMCG00019949
length 805
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00019949
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3722895 ~ 3728526 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCACATCTAATGCCGAGGCTGAAGGAATCGCGGTCCCACGAGTCTTTGCTCAGCCCCAGCAGCGCCGTTGAGGCTCTGGATCTCAGTATGGAGGAGGAGGTCGTGATCAAACCCGTGCACAGCAGCATCCTGGGCCAGGACTACTGCTTTGAGGTTACAACAACAACCGGAAGCAAGTGTTTTTCCTGTCGCTCTGCCGCAGAGAGAGATAAATGGATGGAAAACCTGAGGAGGGCTGTGCACCCAAACAAAGACAACAGTCGACGGGTGGAGAACATGCTGAAACTATGGATTATAGAAGCCAAGGACTTGCCGGCCAAGAAGAAGTACTTCTGCGAACTGTGCCTGGATGATACGCTTTACGCACGGACTACCTGCAAGCTCAAAACGGACAACGTGTTCTGGGGCGAGCACTTTGAGTTCAACAACCTGCCCGCCGTCAAGAGCATCACAGTGCACTTGTACAAGGAGAcggacaagaagaagaagaaggacaaGAACAACTACGTGGGGCTGGTGAACATCCCCATCGTGGCGGTGACCGGGCGGCAGTTTGTGGAGAAGTGGTACCCAGTCAGTACACCCAACCCCAACAAGGGCAAGACCGCCGGCCCCATGATCCGCATCAAGGCCCGGTACCAGAGTATGAACATCCTGCCCATGGAGCTGTACAAGGAGTTTGCCGAGTACACCACCAACAACTACATGGTCCTCTGCTCGGTGCTGGAGCCCGTGCTGAGTGTCAAGAACAAGGAAGAGATGGCCAGTGCGCTGGTGCACATCCTACAGAGCACCGGGAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74865 lncRNA downstream 47881 3671023 ~ 3675014 (-) True G59852
TU74836 lncRNA downstream 75561 3646039 ~ 3647334 (-) True G59826
TU74837 lncRNA downstream 80781 3640038 ~ 3642114 (-) True G59827
TU74835 lncRNA downstream 125135 3597205 ~ 3597760 (-) True G59825
TU74817 lncRNA downstream 231846 3490718 ~ 3491049 (-) True G59810
TU74866 lncRNA upstream 52372 3780898 ~ 3796706 (-) True G59853
TU74878 lncRNA upstream 310989 4039515 ~ 4039918 (-) True G59862
TU74898 lncRNA upstream 366824 4095350 ~ 4095984 (-) True G59880
TU74938 lncRNA upstream 580150 4308676 ~ 4308945 (-) True G59907
TU74954 lncRNA upstream 893451 4621977 ~ 4622357 (-) True G59922
AMCG00019950 mRNA downstream 16798 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019946 mRNA downstream 193259 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 225149 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 343298 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019945 mRNA downstream 395144 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019952 mRNA upstream 378471 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 414464 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 436273 4164799 ~ 4172609 (-) True AMCG00019954
AMCG00019955 mRNA upstream 456779 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019956 mRNA upstream 526746 4255272 ~ 4263577 (-) True AMCG00019956
TU74813 other downstream 242786 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 539829 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 539829 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 611548 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 688560 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 1283918 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1535388 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1548136 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1563064 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2722096 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile