RNA id: AMCG00019950



Basic Information


Item Value
RNA id AMCG00019950
length 2625
RNA type mRNA
GC content 0.61
exon number 11
gene id AMCG00019950
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3675107 ~ 3706097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGTCTGCTCCTCAGGACGCTGGCGTCAAAACGCTGTTTGCTGATTTCCATGATGGCACCATCAGCGtgctCTGGTCCACTTTCATCGCATTGTCGAGCCTGGGCTATCGTGGCCCTTCTCCCCCGGCCGTGCTTTGGTTCTCAGCACACGTTCGCCCTCCTGTAACTCTGACAGCACCGCTCAGCGTCAAAATCACTTATTGTGATGAATTCCAGGGCCTTTGCACATCAACTCCGGTTACCCGTTCTGAGAGCCAGAGACTCTACCCCTGTGAATCCCCCTGGAAATCAAAATGCATAGCTGAACGGCCCAGTGTGTCTGTGGTCCCAACACCATCATGGCCGGAGCTTCCTGTATGTCTGGTTCCCCTAATATCTTCCTCTGCTTCTCCCATCCAGGACTTCCTCACGGACCTCATGATGTCGGAGGTGGACCGCTGCGGCGAGAACGAGCACCTCATATTCCGAGAGAACACCCTGGCTACCAAAGCAATTGAGGAGTATCTCAAACTGGTTGGACAGAAGTACCTACAAGATGCACTTGGCGAGTTCATTAAGGCGCTGTACGAGTCGGATGAAAACTGTGAGGTGGACCCCGGCAAGTGTTCAGCCGGAGATCTCCCGGAGCACCAGAGTAACCTGAAGATGTGCTGCGAACTGGCCTTCTGCAAGATCATCAACTCCTACTGCGTGTTTCCCCGGGAGCTGAAGGAGGTCTTCGCCTCATGGCGGCAGGAGTGCAGTAACCGGGGTCGGCCAGACATCAGCGAGAGGCTGATCAGCGCCTCCCTGTTCCTGCGCTTCCTGTGCCCGGCCATCATGTCGCCCTCGCTGTTCAGCCTGCTGCAGGAGTACCCCGACGACCGCACGGCCCGCACGCTCACCCTCATCGCCAAGGTCACACAGAACCTGGCCAACTTTGCCAAATTTGGCAGCAAGGAGGAGTACATGTCCTTCATGAACCAGTTCCTGGAGCACGAGTGGACCAACATGCAGAGGTTCCTGCTGGAGATCTCCAACCCCGAAACCATCTCCAACACGGCCGGCTTTGAGGGCTACATCGATCTGGGCCGAGAGCTGTCCACGCTGCATTCACTCCTGTCTGAGGGCACTGCTTCCAAGCTGGGTCCTCTTCCACGCATCCTGAGGGACGTCAACACGGCCCTCACCAACCCCTCCAGTGTGCAGGTGTCCGTCACCTCGGAGCGCCTGGCCTCCCCACCCAGCGCCGGTTGCAGCATCTCTACCGGCCTGCAGAAGATGGTCATCGAGAACGATCTGTCGGGCCTGGTGGACTTCACACGGCTGCCGTCCCCCACCCCCGAGAACAAGGACCTGTTCTTCGTGACGAGGAACTCGGGAGCCCAGCCCTCGCCGGCCCGCAGCTCCAGCTACTCAGAGGCCAACGAGCCCGACCTGCAGATGCCCAACGGCAGCAAGAGCCTGTCCATGGTGGACCTGCAGGACAACCGCAGCCTGGAGAGCGGGCCCAACGCCTCGGCTGTGCCAGACTCCCTCAACGACAGCCAGTCGTCCATCGGGCAGTTGGCGGGCGGGGTGTGGTCGGCGCGGACACCCCAGGGCAATGCCAACATCGGGCCCACGATGAGGAGGCAGGGCCAGACCCCCACCACGCCCAACTCGGAGAACGTCCCGGGCAGGCCTCAGCTGCTGGCGCCACTCTCCTTCCAGAACCCAGTCTACCAGATGGCAGCAGGGCTGCCAGTGTCCCCCCGCGGCGTGGCCGACTCCAGCTCCGAGTGCCACAGCTCCATCAGCTCCCAGAGCAACAACGAGGACGGCAAGCACGGCTTCATCAACCACGGCACCAGCGAGGACTTCGCCCGGCGTTCGGGGGAGTTCACGCGCCGCCAGCTGTCCCTGACTGAGAGCCAGCATCAGCCCACTGTCCCACGGCAGAACAGCGCCGGCCCCCAGCGCCGGATAGACCAGCCGCCCCCTCCAGTCACCAGGGGACGCACCCCTCCCAACCTCTTAAACACCACCCCGTACCCCCGGCCGTCCAGTGGGAGCATGATGTCCTCGTCCCCGGACTGGCCGGGCAGCGGAGCCCGGTTACGGCAGCAGTCGTCCTCCTCCAAGGGGGATAGTCCTGAGACCAAGCAGCGGACGATGCACAAGCAGGCCCCCTCCCCCGTGAATCCCAATGCACTGGACCGCACCGCCGCCTGGCTTTTGAATATGAATGTGCAGTATATAGAACACGAAGGCATTGACCCAGATCCCAAACACAGGGAGGAGCTCAGAAACAAAGAGGAACTCACTCAGACTGAAAAGTACCAGCAGGAGATCGCCATCCTGCAGGACAAGCTGCGGCTCTCGGCCAAGAAGTTGGAGGACTACGAGTGCCGGCTGAAGGGGCAGGACGACCAGGCACAGAAGATGCTGCTGGAGTACCAGGCCCGGCTGGAGGAGAGCGAGGAGCGCCTGAGGAGGCAGCAGGAGGACAAGGAGCTGCAGATGAAGGGCATCATCAGCAGCGCCCTGACGCAGCTGAAGGAGCGCTACAGCATGCAGACGCGCAACGGCATCTCCCCCACCAACCCGACCAAACTGCAGATCACGGAGAACGGGGAGTTCAGAAACAGCAGCAACTGCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74865 lncRNA downstream 93 3671023 ~ 3675014 (-) True G59852
TU74836 lncRNA downstream 27773 3646039 ~ 3647334 (-) True G59826
TU74837 lncRNA downstream 32993 3640038 ~ 3642114 (-) True G59827
TU74835 lncRNA downstream 77347 3597205 ~ 3597760 (-) True G59825
TU74817 lncRNA downstream 184058 3490718 ~ 3491049 (-) True G59810
TU74866 lncRNA upstream 74801 3780898 ~ 3796706 (-) True G59853
TU74878 lncRNA upstream 333418 4039515 ~ 4039918 (-) True G59862
TU74898 lncRNA upstream 389253 4095350 ~ 4095984 (-) True G59880
TU74938 lncRNA upstream 602579 4308676 ~ 4308945 (-) True G59907
TU74954 lncRNA upstream 915880 4621977 ~ 4622357 (-) True G59922
AMCG00019946 mRNA downstream 145471 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 177361 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 295510 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019945 mRNA downstream 347356 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019938 mRNA downstream 417270 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019949 mRNA upstream 16798 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019952 mRNA upstream 400900 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 436893 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 458702 4164799 ~ 4172609 (-) True AMCG00019954
AMCG00019955 mRNA upstream 479208 4185305 ~ 4195180 (-) True AMCG00019955
TU74813 other downstream 194998 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 492041 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 492041 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 563760 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 640772 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 1306347 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1557817 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1570565 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1585493 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2744525 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile