RNA id: AMCG00019954


Basic Information

Item Value
RNA id AMCG00019954
length 2482
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00019954
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4164799 ~ 4172609 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAATGCTTTGTGTCAGATATGGTGCAAAAAGAAGCAGAGTGTGAGAGCACGTTTAACTTCACTCTGTATTCAGTAGGTCTCATGGCTGCAGTTTGTAATACAGAATGAGTGGCAGTGCTCAAGAGTAATGTGTGAGGCTTCCCTGTACTTCACAGCATGAACGGAAACAAAAAGGCCTAAATCCCTTTTCTTGACGTCACAACACTATGAACAGCAAGGTGAGCCCAAAGCAGgtcAGTGAAAATGAAGGCCAAAGTGAGAGGAAGAGAAATGACTGTCTATTTGAGCAGTTAGGGTGTACCTTCAAGGGAGGAAGGTCAAAAATGAAGAACCACGAAGCTTATGCGTTCCCCTTCCACGCCAAACTCCTGCTGGAGGAGGTGACGCGGCTGGAGAGGGCCAGCCGGGCGTGTGGAGGCGTTCTGGAGGACGTGAAGCGAGTAGAGGCCAGCGTGTCGGAGCTGCGGGCTGCCCCCTGCACAGGAACGCACAGGACGCTACAGGAGCTGAGCGTGGCAGTGCACTCTTCACAGACTCACATCCCGAGTCTGGCAAGCAAAGTAATTGCCTTAGAAAACAAATTGGCCCTGACTTGCAAGGCCTTCGAGGAGTGCGATGCGCTGGTAAAGACCAACACTAGACAGCTTGATTCAAATAAGCGGTCATTAACGGATCTGCAGGAGAAGATTAGGATCTCTGTCCTAAATCATAGTAACCTGGAGGACTCGATGGTGCACAGCCTTGTCCCAAACCATTCACTGCTCAACAGTTTCCAGAGACCGAGTGAGAGCGGAAACGCTGCGTTTGGGGTGTCGCAGTTCGCCCCTTTGGACGAGTTCTACAGCAGGCTCACACAGTTTGTGCACAATGACACGCTGTTTGTAAAGACTGAATTTTAACCCCACCATAGGCAATATGGACTGGATGAATTATTTTGGGAAAGCAAGGCATTTCATTAGCAAGTTATTTAAGAATGTAACTTGCAGTTTATATCTTCCCAAACATTCCCAGTCCAATTCATTTGTAAAATTGGTTTAGGGGGTAAACAAaacttaatttgtgttttattataaggAGGAAGTGGCTATGTTGGGGATTACACTCCAGGTGTAACAATCAACCATACCACAGAGCAGgatacattttgtcattttgtttaataattatgtCATGATATTCCTGTTCTTCTGTCATGCTATTGTTTCCATGTTTAAGTGAAACACAGGTTTTTTCCCAGTGGGGAAAAGCAATAAGGGCAATCTCAAACCCCTTTCAAGTAAAAATTCCAGTCTAGTTTGCATTTTTGCTCTGTCGAGTGGTATAAGAGGATAGCTACACTGTAACTATGAAGTGTAGAGGGACCTAAGCACAGAGCAACTGAGGAATCAGCCAAAAGTCGAGAAGGTACTGcaatttttcatttcaacttTCTTAGAGCTGCTAGAAAGTACTGCCATCATTTTCATATTGAGCATTGGTGTTGTTGGTCACATGATCTCCATTACCTGAACTTTGCTTTTGGAAAAAGAGCATtatagtagtagtggtagtcgTAGTTTATGATGTTGATGTTCTTTGAAACAAGgtttaatgttaatatataaattaaaagatgCCTGCATGCCTACAATGACTGCATTTCAACTTTCAAATAATGTTCATTAGagttatatttatagttatatataaggtatattttattggatttatgcctatttattttacttgcatttttttttaattttcatttgcaaatatgtatatactCCCTGATACATTAGACAGCTGTTCACAGTCAGGTTGGTGgaataaatacagatttgatCGACCAAGCAATTTAATTCGATTATATTTCACAagttcaaaacatttgattcaaATAGGTATTTCCAAAATCTCAGTAGGCCTATAATGCAATAAGAAATAGCCCATATTTGCAATTGTATACAACAtcgtttaattaatttgaaacactGATTAATAATCTCACCAGGATATATATTCACTCATTTCAGAAACAAACCCATGTtattgcaaaaatgtataacaacaaaacaaacaaaaaatgtttacattatacGTTTTTATTCCTATTCACATGCTGTTAAAGCAAACCATTCTGCTTTAATCTGTGCAGctgcattgtttgttttcatgcaatAAAAACCGGTCTGTGCCTCTCTGACTTATTTTTCCGAAACATTAAACTTGGTGAGTACTCTGCAAGGCGTGTAATGCATTAAATATCTTCAGTCCAAGCCAGATACAGTATTTCTGTAACAACATTCTCCACCCCCTGCATACAGAAATAGGAAAGTAGAAAGGGGGGAGTGGCATGCTTTCAtaatatgaattttaattgttctttttgttttctttgcaaatcATGAGGATTGCTAACTTCTTGTATTATAGTCTAAGCCgtatattcataaatatatacattcaaaggctattgcactttatttaatcacgtgtg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74898 lncRNA downstream 68815 4095350 ~ 4095984 (-) True G59880
TU74878 lncRNA downstream 124881 4039515 ~ 4039918 (-) True G59862
TU74866 lncRNA downstream 368093 3780898 ~ 3796706 (-) True G59853
TU74865 lncRNA downstream 489785 3671023 ~ 3675014 (-) True G59852
TU74836 lncRNA downstream 517465 3646039 ~ 3647334 (-) True G59826
TU74938 lncRNA upstream 136067 4308676 ~ 4308945 (-) True G59907
TU74954 lncRNA upstream 449368 4621977 ~ 4622357 (-) True G59922
TU74974 lncRNA upstream 475413 4648022 ~ 4651002 (-) True G59932
TU74981 lncRNA upstream 495741 4668350 ~ 4668869 (-) True G59938
TU74982 lncRNA upstream 496349 4668958 ~ 4669158 (-) True G59939
AMCG00019953 mRNA downstream 517 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019952 mRNA downstream 30976 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019949 mRNA downstream 436273 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019950 mRNA downstream 458702 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019946 mRNA downstream 635163 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019955 mRNA upstream 12696 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019956 mRNA upstream 82663 4255272 ~ 4263577 (-) True AMCG00019956
AMCG00019960 mRNA upstream 449808 4622417 ~ 4627869 (-) True AMCG00019960
AMCG00019964 mRNA upstream 582915 4755524 ~ 4766859 (-) True AMCG00019964
AMCG00019968 mRNA upstream 702977 4875586 ~ 4886898 (-) True AMCG00019968
TU74813 other downstream 684690 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 981733 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 981733 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1053452 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1130464 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 839835 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1091305 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1104053 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1118981 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2278013 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile