RNA id: AMCG00019960


Basic Information

Item Value
RNA id AMCG00019960
length 714
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00019960
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4622417 ~ 4627869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCTTTCTTGATACCATTAAAAGGCTAATCTCAGCAGAAGCAACAGAGAAGGAGGTCAGCCAGCGTGTGGATGGCGTGCACTATCACATGACCAGGTCGCTGGGCTGTGTCTGGCTGGCCAGTAACCTGAAGTTCCTGCTCTTCAAAAGCAACAGCGACCCAACGTCCCTGGCATCCCACTGCACCTCCAGACTCATActccccctgctggacatGGCAGTGATCTCCTTCTTCATCCTGACCAGTCTAGCACACATGGTCCTCGGCAGAAAAACTCATAAGAGCCCAGGAGACTTGAACAAACCCCTCTGTGACCCCTCACTCCTCTTCCTACAAGTCGATTTCCTGGCCACCTTCATATTTGGACTCCTGTGGCTCGCCTACCCTGACTGGCTGCTCGGTTTCCAAACCAGTGGCCCTGAGGACAGTCTCCACCTCCACCTGACCACAGCCTTTGGGGCCATGATGGTAGGGGACAGCTTTGTGTCCTTCACAGCTCAGGGCTTCAAGACCTACAAGGACAAGACCTCCGTGTTTGTGGGCCACGCCGTGGGGACTGTCGTCTTGCTGATGTTCATGGTCTACACACAGATGACCACCTCGGCGTGGACCACGGCTCACATCTGGTTCGGAATGACCGGAGCCTGCCTGTGGACCGGGAATTCGGTCCTGGGATGCCTCACCTCTCGGGAGTCAGAGAAGGAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74954 lncRNA downstream 60 4621977 ~ 4622357 (-) True G59922
TU74938 lncRNA downstream 313472 4308676 ~ 4308945 (-) True G59907
TU74898 lncRNA downstream 526433 4095350 ~ 4095984 (-) True G59880
TU74878 lncRNA downstream 582499 4039515 ~ 4039918 (-) True G59862
TU74866 lncRNA downstream 825711 3780898 ~ 3796706 (-) True G59853
TU74974 lncRNA upstream 20153 4648022 ~ 4651002 (-) True G59932
TU74981 lncRNA upstream 40481 4668350 ~ 4668869 (-) True G59938
TU74982 lncRNA upstream 41089 4668958 ~ 4669158 (-) True G59939
TU74983 lncRNA upstream 43911 4671780 ~ 4672168 (-) True G59940
TU74984 lncRNA upstream 45415 4673284 ~ 4673609 (-) True G59941
AMCG00019956 mRNA downstream 358840 4255272 ~ 4263577 (-) True AMCG00019956
AMCG00019955 mRNA downstream 427237 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019954 mRNA downstream 449808 4164799 ~ 4172609 (-) True AMCG00019954
AMCG00019953 mRNA downstream 458135 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019952 mRNA downstream 488594 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019964 mRNA upstream 127655 4755524 ~ 4766859 (-) True AMCG00019964
AMCG00019968 mRNA upstream 247717 4875586 ~ 4886898 (-) True AMCG00019968
AMCG00019970 mRNA upstream 271071 4898940 ~ 4908555 (-) True AMCG00019970
AMCG00019972 mRNA upstream 302634 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019971 mRNA upstream 341321 4969190 ~ 4983211 (-) True AMCG00019971
TU74813 other downstream 1142308 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1439351 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1439351 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1511070 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1588082 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 384575 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 636045 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 648793 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 663721 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1822753 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile