RNA id: AMCG00019970


Basic Information

Item Value
RNA id AMCG00019970
length 3084
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00019970
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4898940 ~ 4908555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaagaacagaccaaagatggacaaaggaagctattgaatggatcccaagagactTAAAATGAGCAAGACCACCAACACATAAATGATGGGAAGAAGTATATAGAAGCTTGGCTGGGTGTGATCTGGAAAAGATCTGTACATTGACACAAATGGAGACATCTTAGAGAGGCTtcgtccagcagtggatcaatttAAAGGCTGATGATCAAgagatataatatatacatgaaatatgaaatgagACATGGGTGTGTTAATTagcttttacataatttaaaaaatgtggaaTGCACACTTAGGGATTTCCATACCCAGATCCAagttcctttcttttttaatatatacacacttgaATATACGATTATTTGAAAAGGACCGTGCTAGTCTGTCTTGATTGTGACTCTTTAGAACGCCTTGTAATTTTACTGCAATTTGCTGCTGCCATTTCCTCATGAAATAACTGCAGAAGTGTCTCCCCTAGCTAACCACAGCATTTAGTTAATGATAATTAtagtgtctctctcactctcaaaTTCAGATTTGTACTTTCGGTGCAGTACCTTGGGAAAGACCCATTGACGATCTTCCATTAGACAGGAGATAGCTCTGTGGGGGAATGAAAGGCAGAAgattatacaatataaatacaaataatgtatcaaGACCTGTATCAGTGGTAGAGGCAGCAGTATAGTAAACCGTACATTTTAGGATGaacaattactttattttccaaCAGAGGTGAccgtaaaataaatgtaatttgccaGCTAAGCtgaaaacattgcatttgtaCAATCAATATCTTTGAATGAGTTTATGCCATCTCTTACCCCTTCACCCTTTAGTGCTATTTAAAATCCAGCACAGGTATTTATGTCACTCACAAAGAGAGCATTGACTCAAGGTATCATGTGTAACTCTGTTCTACAGCATCAAtatgttttctcttcttcccATCTTTGTTACTCTAAGCATGTGTGTTAATGTGCTTCACGGGTCTCTCTCTGAAACACTGCAGCCGATTCCTCCACTGACTGTCAGTATGTGCTTGTTGACAGTATTCGTGGATGGAACTGTGTTGTTCCTCTTGAAAGAGAAATAACGGGTCAATCAATGATTGGTAACCTGGGTACACAGAGCTGAGATGAATTAATTTGCAGTGAAGAtcttaaaacaataacacaaaatggaTGATGTTAGGTTTGTCTAGAATCCACAGGCTTTCCTTTCCCAATAACAGTGGGTTTTTAGTATAATTTGGGTATTAGAACATTTGTCTTATCCCCCCAAAAAGTGTAGATTTgaggaattatatattttttatcgtcatgtataaaacaaattatacactGGCAGCTGCAGATTTCTGTGTGCCCCCCCACTCAGTGGAGAAAGGTCCGCGCTTAAATGACAAGGGACCAGCAGGATGCATCTCATCTGCAGATGAATGACATTTCAGTCTGTGCAAATTGGAGCCTCATGCCCAGCTGGTTTAATTTAGAGAGAAATAAATTGAGACTGCAGTTCTAAGGAGAGAGACTCTGATAATTGTCAGCTCCTTTTGCTGTAACAGTGTTTCCTAATTCCACTCCTGTAGACTACTATCCCGGGCTCAGGTATTCTTGAGCTATAATACATTGTAGGAATTAGGCTTTATGCCTTTCCACATGAACTCAAAATTAATTTGGGAATTTGGGGAAAGGGGGAAAAGTTGGAAAATGCCAAAGCCCCGGTTGGTAATGGGTCTCCAGGACTGGGATGAGGAACTGCTGCTTTAATGTGTCCCCGTTGTGCTGTCATCATGACTGAACTGGTACAATATCCCAGCACTCATCACTTCTCTTGTTGCTGTGTGGCTTTGCAGCTCTGGAGTGAGGAGGTGGACAAAGCGGAGCACGAGCTACGCGTTGCGCAAACGGAGTTCGACCGCCAGGCAGAAGTGACACGGCTACTGCTGGAGGGTATCAGCAGCACACACTACATGCAGGACCTACAGAAACAGCTGGGCAGGTTCCCCAATACCTTCGGTGTCAACACCAACACCGGGGCCCCGGCCTCTCCTTCTGCTGCTGCCACCCTCCCAGTGATCCCCACCCCCGGCGGCACGGGCGCCAACTCCCTGGAGCCCGACACCCTGAAGATCGAGGAGGTCCAGCCGCCAGCCACCGGCACCCGCAAGGCCAAAGTCTTGTATGACTATGACGCGGCTGACACCAGTGAGCTCTCCTTATTGGCGGACGAGCTGATCACGGTGTACACTGTACCAGGGATGGATCCTGACTGGCTGATTGGAGAGCGAGGAAACCAAAAAGGGAAAGTACCCGTTACTTATCTGGAGCTGCTGAGCTAAAGGGGACAGACCCACGGACGGATGGACGGACAGGTTATGAAAATTAGgcagtcaaaaataaaaacatccctgCAATTTACAGTTCTCTGGTCAGCTCAGAGTGACAGTTTGGGTGGCGCCCCGATAGCAGAGGGGGAACTCGGCGCCTCCCGGTTCTCCGTCTTTTAAAAGTTAACAAACCTAAATGCATTGTTCTATTCTGCAGAGTTACCTGAGCTCAGATAAATGCAGCTGCTTGTCATTTCCTTTTGAACGATTAGATGCTCACCCAGgctttgtgtgtattttcagtttagACTTGACCCTCTTTGGGGCGAATGCTGTGAATAGCGTGATTACTTCAGACCAAACGCAGGTCTTTCAGATGGGCCCCCCCACTCACTACTCTGACGCAGAGATCTGTACGATGGAGTGACCAAAACTGAGTTTTCCTATCTAAACTGTCTCCAATAGAGCTGTTACTAATCGGCTGTTTTGCATTGATGCCGATCAAAGACGACACGGTCTGCATCCCAGTTGCCATGGCCCTCTCAGATTCTCATCCATAGGAAAGAGCATTTGATGTGatcttttattgtttatttgttatttattcacttCTTCAGAATCCAGGGGTTTATCATCGATCAACTGATGcagttcaatatttaatattccaaAACGACCAGTTCCCcagaaatgaaggaaaacattatagttttaatgttatatatgtatatgtatgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75029 lncRNA downstream 50144 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 98671 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 143748 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 225331 4673284 ~ 4673609 (-) True G59941
TU74983 lncRNA downstream 226772 4671780 ~ 4672168 (-) True G59940
TU75100 lncRNA upstream 77126 4985681 ~ 4989055 (-) True G60034
TU75172 lncRNA upstream 209796 5118351 ~ 5160697 (-) True G60089
TU75169 lncRNA upstream 244503 5153058 ~ 5157193 (-) False G60088
TU75166 lncRNA upstream 246453 5155008 ~ 5157193 (-) True G60088
TU75185 lncRNA upstream 253451 5162006 ~ 5162521 (-) True G60099
AMCG00019968 mRNA downstream 12042 4875586 ~ 4886898 (-) True AMCG00019968
AMCG00019964 mRNA downstream 132081 4755524 ~ 4766859 (-) True AMCG00019964
AMCG00019960 mRNA downstream 271071 4622417 ~ 4627869 (-) True AMCG00019960
AMCG00019956 mRNA downstream 635363 4255272 ~ 4263577 (-) True AMCG00019956
AMCG00019955 mRNA downstream 703760 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019972 mRNA upstream 21948 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019971 mRNA upstream 60635 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019975 mRNA upstream 84081 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019976 mRNA upstream 151936 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019974 mRNA upstream 157085 5065640 ~ 5069039 (-) True AMCG00019974
TU74813 other downstream 1418831 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1715874 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1715874 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1787593 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1864605 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 103889 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 355359 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 368107 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 383035 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1542067 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile