RNA id: TU75113


Basic Information

Item Value
RNA id TU75113
length 861
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00019976
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5012444 ~ 5061512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCTGTGTCGGGGATCTTGCTTCGGTATCCGTGCTGGCGGTGAGACTGGGGCGCCGTGGATTCAGTGCAGGCGCGGCGAGCCGGGAATCAAACCACAACAACGCCGAGCCGAAGCCCAGGACAGGGTCGCCTGTTCGGTACACAGTCACAGCGCTGACCGCGTTACGTTTGCACAGGAAAGCCCCTGTTCACCCCCGTCCTGCCCGACTGCGCAGACAGACTGCCCGGTCCACGCCGCGTTAAACCAGATCTGCTGACATCGTCCAGGCAATTCACAGAGATGCTGAACCAATACAGAATCATTAAGAAAAATTTCCAAGCTCCAGATTAAAATCGTCACGACCCCCAATGCTCCAAAAATAAActcactttattttagtttgacgtttattttattttattttttgttcatttttaaggATACATCCACCATTCTTATTATTGATCTATTATTTATTGGGGCATTCAAGTGAGATTTTAACTGAACTGACACGGGACTCTCTCGTCAATGGCGTTtttaatgaagaagaagaaattcaAGTTTCAGACCCACTTCACGCTGGAGGAGCTGACGGCGGTGCCGTTTGTCAATGGGGTCCTCTTCTGCAAAATCCGCCTGTTGGACGGAGGGGATTTCGCCACATCATCTTCCAGGGAGGAGGTGCTGGAGAACTGTGTTCGCTGGAAGAAGCGGTTCTCATTTGTGTGCAAGATGAGCGCCAACCCCACCACGGGCGTGCTGGACCCCTGCATCTGCAGAGTGTCTGTCCGCAAGGTGAGAAACCCACGCACTGCAGCTCCAACCATACAGAACTGGGGGATCTCTGAGCTTCATGCTACTTGTTTGATAAGCCTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75100 lncRNA downstream 23389 4985681 ~ 4989055 (-) True G60034
TU75029 lncRNA downstream 163648 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 212175 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 257252 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 338835 4673284 ~ 4673609 (-) True G59941
TU75172 lncRNA upstream 57074 5118351 ~ 5160697 (-) True G60089
TU75169 lncRNA upstream 91781 5153058 ~ 5157193 (-) False G60088
TU75166 lncRNA upstream 93731 5155008 ~ 5157193 (-) True G60088
TU75185 lncRNA upstream 100729 5162006 ~ 5162521 (-) True G60099
TU75186 lncRNA upstream 102487 5163764 ~ 5163995 (-) True G60100
AMCG00019975 mRNA downstream 6461 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019971 mRNA downstream 29233 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019972 mRNA downstream 71879 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019970 mRNA downstream 103889 4898940 ~ 4908555 (-) True AMCG00019970
AMCG00019968 mRNA downstream 125546 4875586 ~ 4886898 (-) True AMCG00019968
AMCG00019974 mRNA upstream 4363 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019983 mRNA upstream 70769 5132046 ~ 5153053 (-) True AMCG00019983
AMCG00019982 mRNA upstream 97082 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019985 mRNA upstream 106089 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019984 mRNA upstream 146496 5207773 ~ 5230138 (-) True AMCG00019984
TU74813 other downstream 1532335 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1829378 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1829378 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1901097 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1978109 3031856 ~ 3034335 (-) True G59712
TU75216 other upstream 202637 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 215385 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 230313 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1389345 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1402271 6463548 ~ 6466586 (-) False G60348

Expression Profile