RNA id: AMCG00019983


Basic Information

Item Value
RNA id AMCG00019983
length 4459
RNA type mRNA
GC content 0.51
exon number 22
gene id AMCG00019983
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5132046 ~ 5153053 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACCGAAGACAGAGCTCCGCCTCCGGGGGGGGCTTACGAGCTGCGGCTCCCGCTCGGGCGGCGCCCCTCATTGGCCGGTTGATCCCCGGGGGGCGGGGAGATATGACAACCGGCCCGTGACGTCACAGGACCCCCACAACCCTGGGCCTCGCGCGCGCGCGCTCTGGCCGGCGCGCTCCCCGCGAGGCGTGCGCGTGCGCAGAGGGGCGGCTGTCCCGGAGAGGAGGTCGCGGCGTAACAGCTGTTTGCAGGATCTGACCGAGGGCAACATCCTGGACCCTGGCTTCCAGCAGCGTTTAGAAGATGCTCGCATGCAACTGCGCCAGGAGATCCAGAAGGAGCTGAAGATCAAAGAAGGGGCAGAAAAGCTGAGGCGGGTGATGACCAACAGGAAAAACATGGCACATGTGGAAGGCCAGTTGAAAGTGTCAAACCGTAAATTGGAGAAGCTACACTGGGAGCTGCAAGAGCTTAATGCCCGAGCCATGGCCAGAGAGAAGGAGAACAAAACAGATGATGCAACCTCACCCGACCCTTGCCGATGGGAGGAGAGCACGACCCCCCAGGCCAGTCGCATCCTCACCCTGAAGAGGCAGCTGACCATAGAGACCAAAGTGAAGCAGGGTGCGGAGAACATGATCCACATGTACTCCAATGGATCCTTCAAGGATCGTAAAATGTTGTCCACTGCACAGCAGATGCTCCAGGACAGCCGCACGAAGATCGAGCTGATCCGAATGCAGATTGTCAAAGTCACGCAGGCTGGGGAGGGGGAGTGTGAGAGCAGCGACCAGGAGGGAGACAAGAAAGcaCGGCGCCCCCCCGAGACAATCAACCCTCTGGAGCTACGGGTGGCGGAATTGCGGCACCACCTAAAAATCGAGGCAGCCGTGGCAGAGGGGGCCAAAAATGTTGTGAAGCAGCTGGGGGGGCGCAGGGTGCAGGACCGGCGTGCGTTGGCAGAGGCCCAGGCCCGGCTACAGGAGTCCTCTCACAAGCTGGACCTCCTGCGTCTGTCCCTGGAGCGACGGCTCGGCGAGCTGCCGCCAGACCACCCCAAGCGCATCGTCATCAAAGAGGAGCTGGCGCTGGCCTCATCCTCTGCTGGGCTCCCGAGGCACCGCCTGCAGTCATCCTCCTCCTTCTTTAAGCCTGCCACGCTCACAGGCAGGCTGGAGGTCAGACTGATGGGTTGTCAGGACCTCTTAGAATCGGTGCCCGGGCGCTGCCGTGTGACAAATGTTTCCACGACACCGGGCAGCCCATCCGAAGCCAAGTCTCTTAAAATGCTGTCTGGGATTTCTGGgcgcagcagcaacaacaagcACCTCAAAACAGACGAGCTCTCCATGGAAATCAGTGCTGTCTTAAAGCTGGACAACAAAATGTCTCGGGAGCTGGAGATCGGGGTGTACTGGCGGGACTGGAGGGCACTGTGCGCGGTAAAGTTTTTGCGGCTCGAGGACTTCCTGGATAACCAGCGCCACGGCATGTGTCTGTACCTGGAGCCCCAAGGCATGCTGTTCACTGAGGTGACTTTTGTCAACCCTGTCATCGAGCGTCACCCCAAATTACAGAGACAGAAGCGGATTTTCGCCAAAGAGAAAGGGAAGAACTTCCTGCGTGCGGCTCAGATGAACATCAACATCGCCACGTGGGGCCGGTTAATGATGAGTGTGCTGCCCCCGTGTAGCTCCCTGTCAGCCATGAGCCCCCCTCTGTCAAGCTCTTCCGACCCCGAGAGCACGACTTCGCCACCTGCTGAAGACCGGGCCAGCACAACCTCTCCGCTGCCAGGGGATGGACATGTGATCAAGTTGAACTTCAGTGAGGATCCGCCTCCCAAGCCCCCCCGTCTCAACATGGGAAAGGCCGAAGCTGAGAAACCTGTTGCTTCGCCTTCCAAGGGAAATCATATGGAAGGAAGAAACCAAGTGAAAGGATCCAGCCAGCCCTCTACCAAAAAAAATGAAGGATTGCAGATTGAAGATTTCACCTACATCTCAGTTCTGGGAAGAGGACATTTTGGAAAGGTGCTGCTGGCAGAGATGAAGAAAACAAGGAAGCTGTATGCCATCAAAGCCTTGAAGAAAGGAGACATCGTCACCCGAGATGAAGTCGACAGGTTCTTGATGTGCGAGAAGCGAATCTTTGAAACGATCAACGCCTCGCGCCACCCCTTCCTGGTGAATCTCCATGGCTGCTTCCAGACCGCTGAGCATGTGTGCTTTGTCATGGAGTACTCCCCTGGTGGAGACCTGATGATGCACATCCATAGCAACATCTTCACAGAGGAGCAGACACGGTTCTACGCTGCCTGTGTGGTGCTCGGGCTGCAGTTTCTGCACACACAGAAGATCGTTTACCGAGATTTGAAGCTGGACAATTTGCTGATGGATGTGGACGGCTTTGTGAAAATCGCAGACTTTGGGCTTTGTAAAGAAGGGATGGGTCATGGGGACCGGACATCCACCTTCTGTGGCACCCCCGAGTTCCTCGCCCCAGAGGTGCTGACTGACAATACCTACACCCGGGCCGTGGACTGGTGGGGCATGGGCGTCCTCATCTACGAGATGCTGGTGGGAGAGTCTCCATTCCCTGGCGATGACGAGGAGGAGGTGTTTGATAGTATTGTGAATGATGAAGTCCGGTACCCCAGGTTCCTCTCGCCAGAATCCATCTCGATCATTCAGAAGCTGCTTCGCAAGAACCCAGAGAGGAGACTGGGAGCCGGAGAGCAGGATGCAGAGGAAGTCAAGAAGCAGAAATTTTTCCAGGACGTTGACTGGGAGGCACTGCTGGCCAAAAAAGTGAAGCCGCCGTTCATGCCATCGATCAAGGGCCCCTCAGACGTCAGTAACTTTGATGAGGAGTTCACGCGACTGAAGCCCGTGCTGACGCCCCCGAGCACACCCTGCATCCTCACCGCGCAGCAGCAGGCTGTCTTTGCCAGCTTTGACTTCACCGCCCTGCAATGAGGGGCTTGCTGAGGAACAGAGCGGCCCGTTCAAGAGCACTGCATTTACAATTTTGCACTACATCCTATTTCTCTCCTtactacctacctacctacttCTAGGTGAGCTGACTGCTGATCCAGTGAATAACAGCGGGAGCGTTGGTGTTGGAGAGTCCATGGTGGGAGGGTCCTCTTCATGGCGTTGCCACAGTTGTCTTGCTGTCTGGGATGGTTGGTCAGTGCATGGTCTAATTCCCTCACACCTCCAGTGTGATCTGGTTTCGTGGTCATATAAAGGGTCAGGTTCTCtcattactttcatttttaaatttttgttgCTATTTTTTAAGTCTTCAATTCTGTTACTCCCAGGAAAAGGTTGTTTTAAGAGTCTTTAAATTATGTGTTCATTGCCCCCAAGCTTCCTCTGTGTAGTCGTGTAATGCTAGCGTTAAATTGAAGGGCATCGCAGTGGCACTTGCTACTTGGCTGTGAAACACGGAGGCAACAACGCTGGGGTGAAATGGCATTAACTTTGGTTTGTGCTACTTCAAAACATGGTCGCTGTCGTACCCTCAGTATAGGACAATTACTCTACTGACCTTATGCTGCTTAAGTTATATAAGCCCTGTACATAAGATTATATTCAGGATTTTATAAATGCGCCTGTAAAAGGACTAAAGCAAGAGAGAATGTCAAGTGATGAATTTTATAAAGACAACTACTtctgaaacatatatatattttgaaaatgctttgtgtgtgtttccgTGTCGACGTTTCCCCTGGCCGGCGTGGTCTGTATGAAGCTAATTGTATGAAGTGCCTCTGCTCTGCTGTTTTGAGCATGAATGTGAACTTTTCAGACTGAGCCTGGCAGAGAAACTGATTCAGTGGAAAGCCGAGTTGAATGTGATTTAGTGGGTGCTAATTAGGCTATCAAGAACCAGTACTAACCTAATCTAATTAATCTGGGGTGCAAATGAAGGATGGATGATGTAGTATGCATTATTAACAAGTTGATCTCGTGATTTTTCTGAAGTGAAATATAAGAATTTTTAAGTTCTATACTAAAGTGTCAAAATCTAACTGCATTCCTTGGGAACCACTTGTAACTCTGTCTGTGACTGTCTATAATGAATGTGTGTGGTTTACTACTGAAGTATTTTATActgtaaaaaggaaaacactgtTGTCTAAAGCTTTAGGTGATATTCTTTCATTGTGTCCTTATATGTCTATACATTGGAGAACAAAAGATAAGTTATAATAAAATTCCTTGTCATTAATGCTGGgatataatgtttataaatgctttactatgtttattttccttcgCCTCTTACAAAGTAATGTTAAGAAGTACTGAAATATCAATACATGGCATTTCAAAGGGCAAGAATATGGTTATTGTGGTTAATTAGTGCTTTGACACATTTAGTGTGATTAGTGCCTCTTAATTGATTGGTCTGTCAGATCTCTCCATTAAGAACAAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K06071 PKN1; serine/threonine-protein kinase N1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75100 lncRNA downstream 142991 4985681 ~ 4989055 (-) True G60034
TU75029 lncRNA downstream 283250 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 331777 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 376854 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 458437 4673284 ~ 4673609 (-) True G59941
TU75169 lncRNA upstream 5 5153058 ~ 5157193 (-) False G60088
TU75166 lncRNA upstream 1955 5155008 ~ 5157193 (-) True G60088
TU75185 lncRNA upstream 8953 5162006 ~ 5162521 (-) True G60099
TU75186 lncRNA upstream 10711 5163764 ~ 5163995 (-) True G60100
TU75187 lncRNA upstream 12214 5165267 ~ 5165488 (-) True G60101
AMCG00019974 mRNA downstream 63007 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019976 mRNA downstream 70534 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019975 mRNA downstream 126063 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019971 mRNA downstream 148835 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019972 mRNA downstream 191481 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019982 mRNA upstream 5306 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019985 mRNA upstream 14313 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019984 mRNA upstream 54720 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019987 mRNA upstream 81177 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019993 mRNA upstream 123611 5276664 ~ 5277926 (-) False AMCG00019993
TU75113 other downstream 70769 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1651937 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1948980 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1948980 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 2020699 3107801 ~ 3111347 (-) True G59720
TU75216 other upstream 110861 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 123609 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 138537 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1297569 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1310495 6463548 ~ 6466586 (-) False G60348

Expression Profile