RNA id: AMCG00019984


Basic Information

Item Value
RNA id AMCG00019984
length 3413
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00019984
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5207773 ~ 5230138 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGACCGTTACCCCGGAAGAGGAAGTGGGGCGCAGTGTTTTCAATGCGCTGTCCAGGGCTGCCGGTCGCTTCAAGCGGAGATCACATACGAGCTGCTGTCTTTTGCGCTGGAGGGATGCCTGCAGAAAGTTCACGATGGGATACATTGGAGGCTCTGAAAAACTCCGACAAGGGCAAACTGAAATATCACCCGGGCTGGCTGCAGAAAGGCGAGGACCTGTTGGCAGGGTGCAATGCACCCCCCAGTCTGTCCGCCTTCTCTGGTCTAGTCTTGAAGAGACTAAGTCCAAAGCTGCTAGTGAAGACTTCCTCTCTGAGCTCAGACTCCAGCCCTGGTCTGTTTGAAGATGTCCTTGTCTCTTCCAACTCTGTGCCGTCCAGCCCCAGGCTTTCAATCAAACCAAACCTGCagtcccctctctccctccagcagCCCCCCAGCCTAGAGTGTGAGGAAACCACGGAGGAGAAGATGCCACCAGAGCCCAGGCCCTCCATCTCCATGCTCTCTCCCAGGGCATCGCAGGTAGAAGGTTGCATCCGCATCTGTGAGGAGAACCACCGATCCAGGGCAAAGgcCGAGCTGAGCCAGCGGCAGGAGCTGCAGGACCGGCTGGTGGAGTCGGTAGCCTGCCGGGAGTCGGAGCAATTGAAACGATTTGAGGAGTTCATGGAGCTCAAACAGAGACAGGAGTACCAGATCATGAGAGACATGATGGAAAGAGAGACCCAAGAGAGTTTGGGGCGCCAGGAGAAGCTCAAAGAGGAACATCGCCACAGAATGAAGATCCTGAACCTGCGGCTGCGGGAGGCGGAGCAGCAGCGGTTGCGGGAGGCCGAGCTGGAGCGGCAGCGGCAGGCAGAGGGTCGAGAGCGGCTGCGCGCGCTCAACGTCATCCAGGAGGAAGTGCTCCAGCTCAATCAACTGCTGGAACCCGGTGCTTCCCAGGCCCCACTCGACCTGTCCGCCTTCATTACCCGTGGCAACCAGCTCTGCGGCCAAGTCTCGGAGGTCATCCGCACCACTGCCGAGGGAGGGTTCCCCAGCCCAGAGGACATGTCAGTGGCAGAGCGGGCGCTGCAGGAGATGCGTGCCGTGATCGGAACCATGCAGCAGGAGGTTGTGCTGGcccaggagaggaggaggaaggaggaggcAGAGCAGGAGGAGCGGCAGAAGCAGATTGAGTTGCAGAAACAACAGGGGGCACAGAAGAGCGCCACACCCCCGACCCAGCGGAGGCAGAGGAAAGAAGGACTCCAGACGAAGGCAGATGAAAGCACCATGAAGTGGTACCAGGAGATACAGGACGCATCCAATCATTGTGCTGCGTCATTTGAAGACCTCAACAACACTAAGGACATGCAGACAAAGAAACTAAGAATGGAGCTGCAGAAAGCGGCCTCAATCCCCGTCAGCCAGATCTCCAGTTCCAAGTTGCGGGAGGTGTTTGACAAAATTGACAAGCTGCTGTCCGGGAAGCCAGTTCAGTCTGGGGGCAGGTCTGTCTCTGCTACACATCACCCACATGGACTTGACTTTGTCAGCTATAAACTGGCAGAAAAATTTGTGAAACAAGGGGAAGAGGAGGTGGCATCGCATCACGAGGCTGCTTTCCCCATTGCTGTAGTTGCCTCGGGGATCTGGGAGCTGCACCCCAAGGTGGGTGACCTCATCCTGGCCCACTTGCACAAGAAGTGCCCCTATGCAGTGCCCTACTACCCCCCCATGAAGGATGGCACCTCAGTTGAGGACTATCAGAGGATTCTGGGATATCGTGTGGGGGACTCGGGCGTGGAGGCTCAGGACAGCTTCCTGAAGAGGATGTCTGGGATGATTCGCCTGTATGCTGCCATCATACAGCTGCGCTGGCCTTATGGCAACAAACATGGGGCTGATCCTCATGGTTTGAACCATGGCTGGCGCTGGCTGGCCCAGATGTTAAACATGGAACCTCTGGCTGATGTCACAGCCACACTACTTTTTGATTTCCTAGAGGTGTGTGGTCATGCCTTAATGAAGCAGTACCAAGGGCAGTTTTGGAAGCTAATCCTTTTGATTAAAGAGGACTACTTCGCCAGGATTGAGGCTATCACCAGCACTGGGCAGATGGGCTCTGTCATGCGGCTGAAGCAGTTCCTGGAGACATGCCTGAGGCGGCGAGAAATTCTTCCTCCCAAAGGCCAGCTGAGCTCATCTTTTTGGAGGTCTTGAAGGGTAGGCGGGGAGGCCCTTGGACAGCAGGGCCCTAATTGAAAACATCTGTCTCACAGCTTGGGAATTAACATCCTGCTCCTTTATGAAGTCACTGAAAATCCAATACCTCTTACATGAAATGGGAATATGGTGTTACAGTCTTGATGCAATACAGTATATCGTACGTGGGAGAGAAGCAAAGGAGGGCATGAACTATACTATGGAATATGTGAGcctgtaaaataacattataccTGTGTTTTAGAAGCCTTTCAATTTAGTGTGTAGAAATTGTAAGCAATCCCAATCTATTTGTGAGCTTAAATCATGAATCTGCTTAGCTGTCTTGCATATATTGatcaaattgaaatataatcCAGTTTTATACAATGTacaagacattttgtttttggaagcaaactgtttttcagttttacttttttgtgagAGGGGAGCTCCACATCACTAactgtagattttatttttgtttgttttttgttacagcaacattgtacattattattgttagccATGACAGTTGTTGGTCGAGCTCACAGGAAAGATCATCCATTTAAAAGCTCAATGAACTGTCTCTCCTACAATCTCTTAATTTTGACTGGGGGTTTCAGATTCCCTGTTCCCCTTTGTCTTTAtaaattttgcattttatttctgtttttatttttaaaggtttgtgTAActaagtttacatttttgtaaattctGACCTCACCCTCCACCAACTGTTTCTGACTgaagaatacttttttttttttttaatacatatttattctgaCAAAGAACAGCGCTTGTCCAAAGCTCAGTGCAATTAAGCTGTacgtttattttcatgtgtggAATATTAGCTTCTGTTCCTATTTAATTGTACattgtttgtatataaatacattattttgttttataaaattgGAATACAGTGTCCATAATATGTCTATAAGGTGTAATTTAGTCTCTTTCTATGAGTTAGGGCTCTAGCAGTACAATAAATCGTATACTAGGAGACGAATCTGAATTAGGGCAGAAGTGCCAGGAGGCTTTAATGTACCTGAAGAACTGAATTCCGGGATCTAGAACATGGCAGTAGTCTTAGTCAGCACATTCTATGCTCGAATAAGAGTCAACAACATCAGTGGAATATGCATATCTGGCAGTGGAAATAGACTGAGAAATCAATACCATTAAATCTAAAAGTC

Function

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K18723 GLE1; nucleoporin GLE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75188 lncRNA downstream 40483 5166359 ~ 5167290 (-) True G60102
TU75187 lncRNA downstream 42285 5165267 ~ 5165488 (-) True G60101
TU75186 lncRNA downstream 43778 5163764 ~ 5163995 (-) True G60100
TU75185 lncRNA downstream 45252 5162006 ~ 5162521 (-) True G60099
TU75166 lncRNA downstream 50580 5155008 ~ 5157193 (-) True G60088
TU75287 lncRNA upstream 241181 5471319 ~ 5523619 (-) True G60179
TU75342 lncRNA upstream 760807 5990945 ~ 5991184 (-) True G60230
TU75343 lncRNA upstream 765331 5995469 ~ 5995688 (-) True G60231
TU75347 lncRNA upstream 806427 6036565 ~ 6040665 (-) True G60235
TU75349 lncRNA upstream 825411 6055549 ~ 6055822 (-) True G60237
AMCG00019985 mRNA downstream 893 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019982 mRNA downstream 48453 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019983 mRNA downstream 54720 5132046 ~ 5153053 (-) True AMCG00019983
AMCG00019974 mRNA downstream 138734 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019976 mRNA downstream 146261 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019987 mRNA upstream 4092 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019993 mRNA upstream 46526 5276664 ~ 5277926 (-) False AMCG00019993
AMCG00019992 mRNA upstream 61454 5291592 ~ 5292616 (-) True AMCG00019992
AMCG00019989 mRNA upstream 67315 5297453 ~ 5301869 (-) True AMCG00019989
AMCG00019990 mRNA upstream 145728 5375866 ~ 5380964 (-) True AMCG00019990
TU75113 other downstream 146496 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1727664 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 2024707 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 2024707 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 2096426 3107801 ~ 3111347 (-) True G59720
TU75216 other upstream 33776 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 46524 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 61452 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1220484 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1233410 6463548 ~ 6466586 (-) False G60348

Expression Profile