RNA id: AMCG00019989


Basic Information

Item Value
RNA id AMCG00019989
length 899
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00019989
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5297453 ~ 5301869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAGGTCCCTATCCCTGACATGTTCCTGTATTCTTTGCTGGTGGGGCTTGATGTCCAAGGCTTGCTGTTgttcatttttgcatttctatTGATAACTGACTTCCTCAAGAACAGGAACCCCAAGAACTTCCCCCCAGGACCCTGGGGTCTGCCCTTCATTGGGAATGTCTTCAACATTGACACAAAACAGCCACATATTTACCTAACTAAGCTAGCAGATGCCTAtggcaatgttttctgcatTCGTCTGGGAAAGGACAAAGCAATGTTTGTTATGGGTCACAAAATGGTGAAGGAGGCATTGGTCAATCAGGGAGAGAATTTTGTTGACCGGCCTTCTAGCCCAATAATGGACAGAATTTATTCCGGAAGTGGCTTGATCTTAAGCAACGGCCTCCATTGGAAAAAACAGAGAAGATTCACTCTCTCCACGCTAAGGAATTTTGGACTGGGTAAAAAGTCCCTGGAGTCTGTCATTGTCGAGGAGAGACGATTCCTTCAAGAAGCTCTTGAGAACGAGCAAGGAAAGTCTTTCGATCCTCACTTCATTCTTAATAATGCTGTCTCCAACATCATCTGTAGCATGGTCTTTGGACACAGGTTTGAATACAGTGACAATCATTTTCAAAAGTTGCTGAAGCTGCTCTCCGAATCTACTTACCTTGCAGGAACCATTTGGGCCAAGCTCTACAAAGCTTTTCCTGCTGCTATGAAGCTTGTTCCAGGgccacacaataaaatattcagcAACTACAAAGAGCTAATTGCGTTTGTGAAAAAAGAGTTGGAGAAACACAAGGAGAACTGGGACCCATCAGCCCCCCAAGACTACATTGACTCTTACTTGGAAGAAATATGGCAAGCCATGATGATTTGGACTGGGGTAGAGGTAGCAAGG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75188 lncRNA downstream 130163 5166359 ~ 5167290 (-) True G60102
TU75187 lncRNA downstream 131965 5165267 ~ 5165488 (-) True G60101
TU75186 lncRNA downstream 133458 5163764 ~ 5163995 (-) True G60100
TU75185 lncRNA downstream 134932 5162006 ~ 5162521 (-) True G60099
TU75166 lncRNA downstream 140260 5155008 ~ 5157193 (-) True G60088
TU75287 lncRNA upstream 169450 5471319 ~ 5523619 (-) True G60179
TU75342 lncRNA upstream 689076 5990945 ~ 5991184 (-) True G60230
TU75343 lncRNA upstream 693600 5995469 ~ 5995688 (-) True G60231
TU75347 lncRNA upstream 734696 6036565 ~ 6040665 (-) True G60235
TU75349 lncRNA upstream 753680 6055549 ~ 6055822 (-) True G60237
AMCG00019992 mRNA downstream 4837 5291592 ~ 5292616 (-) True AMCG00019992
AMCG00019993 mRNA downstream 19527 5276664 ~ 5277926 (-) False AMCG00019993
AMCG00019987 mRNA downstream 62999 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019984 mRNA downstream 67315 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019985 mRNA downstream 90573 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019990 mRNA upstream 73997 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00019994 mRNA upstream 266649 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019996 mRNA upstream 302574 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019995 mRNA upstream 386662 5688531 ~ 5709863 (-) True AMCG00019995
AMCG00019997 mRNA upstream 467204 5769073 ~ 5787456 (-) True AMCG00019997
TU75228 other downstream 4780 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 19162 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 31528 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 236176 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1817344 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 1148753 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1161679 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 1161679 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 1166419 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 2138934 7440803 ~ 7562592 (-) True G60516

Expression Profile