RNA id: TU75228


Basic Information

Item Value
RNA id TU75228
length 404
RNA type TUCP
GC content 0.46
exon number 2
gene id AMCG00019992
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5291590 ~ 5292673 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAAACTCTCATTCTGTTTACACTACACAGATATATTTCAGTAGTACCTTCCTACCATGCTTCTCTATACCTTCCTGGGGTGGCTGGACATCAAAAGCTGCttgctgtttctctctgtgtgtctgctaCTGGCCGATATCCTTCTGAACAGAAATCCAAAGAATTTCCCTCCAGGCCCCTGGCCTTTGCCATTGCTGGGAAATGTCTTTACTGGTGTTGACTATAAAGCCATAGACAAGCTTGCTGCAGAGTATGGCAGTGTATTCAGTTTAAGGTGGGGCAGAGAGAAGATGGTGTTTGTGTCGGGGTACAAGAGAGTGAAGGAAGCTTTGGTCGATCAGGGCGAGATCTTTGCTGACCGTCCTATAACTCCTCTGTTTCATAAAGTCTTCAAAGGCCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75188 lncRNA downstream 124300 5166359 ~ 5167290 (-) True G60102
TU75187 lncRNA downstream 126102 5165267 ~ 5165488 (-) True G60101
TU75186 lncRNA downstream 127595 5163764 ~ 5163995 (-) True G60100
TU75185 lncRNA downstream 129069 5162006 ~ 5162521 (-) True G60099
TU75166 lncRNA downstream 134397 5155008 ~ 5157193 (-) True G60088
TU75287 lncRNA upstream 178646 5471319 ~ 5523619 (-) True G60179
TU75342 lncRNA upstream 698272 5990945 ~ 5991184 (-) True G60230
TU75343 lncRNA upstream 702796 5995469 ~ 5995688 (-) True G60231
TU75347 lncRNA upstream 743892 6036565 ~ 6040665 (-) True G60235
TU75349 lncRNA upstream 762876 6055549 ~ 6055822 (-) True G60237
AMCG00019993 mRNA downstream 13664 5276664 ~ 5277926 (-) False AMCG00019993
AMCG00019987 mRNA downstream 57136 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019984 mRNA downstream 61452 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019985 mRNA downstream 84710 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019982 mRNA downstream 132270 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019989 mRNA upstream 4780 5297453 ~ 5301869 (-) True AMCG00019989
AMCG00019990 mRNA upstream 83193 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00019994 mRNA upstream 275845 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019996 mRNA upstream 311770 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019995 mRNA upstream 395858 5688531 ~ 5709863 (-) True AMCG00019995
TU75221 other downstream 13299 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 25665 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 230313 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1811481 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 2108524 3166237 ~ 3183066 (-) False AMCG00019942
TU75483 other upstream 1157949 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1170875 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 1170875 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 1175615 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 2148130 7440803 ~ 7562592 (-) True G60516

Expression Profile