RNA id: AMCG00019997


Basic Information

Item Value
RNA id AMCG00019997
length 1020
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00019997
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5769073 ~ 5787456 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCATTTTCTATGCTGTTGGCTTCCTTTTAAACAGTCTGAGTCTGTGGGTTTTTGGGTCCCATGTGAAGAATTGGAACTGTGGGACGGTGCTGCAGTTTAATCTGGCGCTGACAGACATTGTCCTTACTCCGATGGTACCCTTCATGGTCCTGTACCTACAGCAGGACGACTGGCCCTATGGGCAGTTCCTGTGCCAGCTCAAAGCCTGCCTGCTGAGTATTCAGATGTACGGGAGCATTTGTTTCCTGACGCTCATCAGCATTCACCGTTACATGACAGTCGTCCACAGGGCAAGCAAACCTTGCTTCGCAGACAAGAGCTTCATCAAAAGGCTCTGTCTGGGGGTGTGGGTGGGCCTCCTTCTCCAAGGACTTCCTTTCTTTGTCATCTTAAAGACCTCAGAAATAGACAACTCAACCAAGTGCCTCAGTATCCACCAGTCCGACATGTCCGTGATCTATTTTTCATACAACGTTGCCATTCTCCTCTTCGGTCTGATTGTGCCTTTCAGCGTGTGTGTGGTGTGCTACAGTTGCCTGAGTGTTTTAATGTCAAAAGTGAAGATCTGCAGCCTCAAGGGCCAGATGATGAAGGCCAAGTCTACTCAGCGAGACATGGAGCAGGCGGGGCGGCCGGCGCGTCCCGAGGAGACGCTGCAGAGATCTGAGGAGACAGGTGGGCAGCACAGAACAGCCTGCGctctccagcagggggcagtcCAGCGGCAGTCCCACAAGAGAAGAGTGCGCTGTGAACAGGCTGAGGCGCAAGCGCACACGCTGCCACGgcACCGAGCTCGCAGGAGTGGTACTGCGCTGCTCCACAGCAGCCCTGCAGCCAGGGTGCAGGTGGCAGTCATCCGTACATCCTTGAGAAAGAGGAGCAACACCCTCccaaagaagaagaggaagatcCATCCTTCTGGCTTCAAAGGGAAAGGATGGTGGTTGTCATCAGCCTCAAAGAAGAACTTCATCTTCCCTGAGAAACTGTGCATGCTGTGGTTTCACTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75287 lncRNA downstream 245454 5471319 ~ 5523619 (-) True G60179
TU75188 lncRNA downstream 601783 5166359 ~ 5167290 (-) True G60102
TU75187 lncRNA downstream 603585 5165267 ~ 5165488 (-) True G60101
TU75186 lncRNA downstream 605078 5163764 ~ 5163995 (-) True G60100
TU75185 lncRNA downstream 606552 5162006 ~ 5162521 (-) True G60099
TU75342 lncRNA upstream 203489 5990945 ~ 5991184 (-) True G60230
TU75343 lncRNA upstream 208013 5995469 ~ 5995688 (-) True G60231
TU75347 lncRNA upstream 249109 6036565 ~ 6040665 (-) True G60235
TU75349 lncRNA upstream 268093 6055549 ~ 6055822 (-) True G60237
TU75364 lncRNA upstream 292153 6079609 ~ 6079871 (-) True G60252
AMCG00019995 mRNA downstream 59210 5688531 ~ 5709863 (-) True AMCG00019995
AMCG00019996 mRNA downstream 153617 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019994 mRNA downstream 194387 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019990 mRNA downstream 388109 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00019989 mRNA downstream 467204 5297453 ~ 5301869 (-) True AMCG00019989
AMCG00020002 mRNA upstream 375494 6162950 ~ 6172474 (-) False AMCG00020002
AMCG00020003 mRNA upstream 390800 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020005 mRNA upstream 398775 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020012 mRNA upstream 520077 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020013 mRNA upstream 541552 6329008 ~ 6333367 (-) True AMCG00020013
TU75228 other downstream 476400 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 490782 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 503148 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 707796 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2288964 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 663166 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 676092 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 676092 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 680832 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1653347 7440803 ~ 7562592 (-) True G60516

Expression Profile