RNA id: AMCG00020002


Basic Information

Item Value
RNA id AMCG00020002
length 4420
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00020002
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6159577 ~ 6172474 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCTCCGCCCCAGCGCTGTCAGCGAGCCCGGTTTCAATAAAGCTCAGGAGAAGCGTGCTGCTGTGAGGAGTAGTGTGGGTGCAGCTGGGAGGAAGCCTGCTATTCTGTAACACGtccattttaaaaatcagcCTGTAGTAAAgatcttaaaacacacacagtttagcCATGGCAGAAAGTGACTGGGATACCGTGACTGTCTTGAGGAAGAAGGGCCCGACGGCGGCGCAGGCGAAATCTAAACAGGCTGttgcagcagcacagagaaggggagaggaaCTGGAAACCACAAAGAAATGGGCTGCaggacaaaacaaacagcacttGGTGACCAAAAACACAGCCAAGCTGGATCGGGAGACAGAGGAGCTGCACCACCAGAGAGTCTCGCTGGAGGTGGGCAAAGTCATCCAGAAGGGCAGACAGGAGAGGGGAATGACACAGAAAGACCTGGCCACTAAAATCAACGAAAAGCCCCAGATCATTGCAGATTATGAATGTGGGAAAGCAATCCCTAACAACCAGGTTTTGGGCAAGATTGAGAGAGCCATTGGGATGAAGCTACGTGGGAGGGAAATTGGACTACCCCTCGAGGCCGTTCCCAAGAAGAAATGAGCACAAAGCCTCGAAGTCAGCTCCCTGTACCAACGGGGCTGATCTCGCCCGGTTCCCACTGGTGAACCGGAATATTCAGTTTCATTGCCAAGCTGAAGAATGAAGGCATTCAGACTTGATttccacatacacacaaataaaatcccaaattgctgtgattttaaaaatattgggTTTGGCATGGATTGATCTACTGGAGAAAGTTgatccagattttttttttttgcaaacttaATTACCATATTTTTTCCATGGTCATTTGAGTGatttcttattttccatttcaaagtgATTAAAGCTGAATCTATTTTTAGCTGTGCTTTAAAGCATCTCTTGGAGTTTCTAGGGTATTGATACACTTAAGCCTGGGACacccaagtttttttttttttttggctggaCTTAAAATAAAGATGGAACCCTTTGGCAATTCACCTGTATCTGTGGCTTTCATAAAATTTTATTTGACGTGGCAGTGTTTTTCTACTTTAGTGGTGGGTCCAATGTCACAGTCACAGCTTTTCAAACTTACCagaggctttttattttttataatgttatatttatttacatcatTACTATGCCATTATCTTGGGTGCTATGGGGGTTAACTTTAAAAGTTCACAGGAAAAACATAATCATGCAACACTCATTAATTGAGCATTGGGTATCTATTTCAGCATCTAGTGCCCGGTGTCTGTACGGACAGTTTGGGGGcagaaaattaaaatctgaagtGCAAGTACTCTTGTCTTGGTTttgtcacatttgttttcatcagcatAACTATTTTGGTACATTACATTGGTAATCTTGAGTCAATAAGGCCTTGCCAGACTTTAAGacctatgtatatataatttatctatttatgtcccacatcttttcttattttgtaaggaTACTCATGCAGTGGAGTAGGTTATTTTTAAGTATGAACACTCCTATCTGTAAGTGGTGCACATGACTGCTTGCACGTGCTTTTCATAACATGCTTCGGAGAATCTTCCTCTGATGTACCCATTTATTAGTCCCTCAGCATTctctaaacaacaacaaaaattaccATCAACTGCAGTCTGAATGTTCAGTGTATTGGGAAAATAGCAGTCTGCTTTAAAGAAATCTTTATCAAATGTGTTTAGTTTCTTCTACAAAAGCAGACATTTGTCTGTGAGGGAGGATTTTGGTGGGAGGCGGACCAGTACTGTGTAGCTGAAATTGTATGTTAATATTGTTAAGGTTAAAATTAcaccattaaatatttacattaggTTGTGAAAGGTGGAATGGAGAAGTTTATACGCATGTCTCATGGTGTAAGGGAAATCTTACAATAGATTTGTAGGGTGACAACCACACAATTCATGTATAAAATTTGGCAGAACCCCATTGTATCTGTTTATATCATCTAAAGCTGAAGCTCTCTTTAAATAAAGATCTATAGTTATTATAAGCATCATATTCAGAATTAAGGCTGGGTGAACTGAATTGTCCGGaagctgtttttgaatgtttgatAGCAGGAATGTTTAAGTGGTTATGTAGCAGAAGGTTGAAATCAGATTTAGGTAAATTGCTATCAAGCTTAAAATTAGCTGATATCAAGAGTATACATGTTTATTGGATTTACAAAGGTTATCtgcttttaaaagtttaatattaattttgtgtgAGTTTATGGAATGTCAGCATGcagatatcaaattaaaaagtgttgATATCCAGCATAGTACTGTTAATATCAAAGTGTGTGATTTGgatgtcaaatttaaaatgtttcatatccGGAATAAGGATGTTGATCTCAAAACGTGTTGGGGATATCCGAAAAGGGTgatgaaatgttaaaaaggcTTGCCATAGGCAATCTTTGCTTGGGTCTTGTGAAGCTCATACAGATCTTGTGATACTATGTTTCAGAAATTGCAACAATTTTCAAGTAGTATACTCGGTATTCGGTAGAAGCTAAATCCTTAGTTGAGCAAAGATTGTGAGAAGTGGTCCGAAGGCCTTGTGATATAAGAGGCCTTCGGAATTGCTTTATCTTGCGTTGATTCCTTATGTGTTACATCAGGCTATTCTCAATCTGGGTTCAGGAGACCAGCTGTGTCGTCTTGTTGGAGTTCTGCTTGAGCTCCCAGTTAACGAATCAATCCTTTAATCAAACTAATTAAGTACTTAATTAAACATTGTACTTAAACTCGGTTCTTAAATAGTTGAGGATTCTGTGACTCGGGGCTCAATGAAGTAATGGGAAATCTTGTCTGGGTTTAAAAATGGCACATATCTATAGTGTATCTGATGAGATTTACACAAATTACCACCTGATGTCTCCAGGCAGGTATTATAACTGTTTCTCAATCCCAGTTTCAAGCTGTGAGTAAAATTTGGTTTTACAGCATAATTTAATCGATGTAGAAATGTTTCGGAGTGGATTTTCAATTAAGGCGTTTAACATCttatttggaataaaaacatgacagtCATCCTAAAGACTAGGTGAGAATTTACGTTTTTCCAACCTTATCTTCAACCTAGATTCACAGCTAAAATCCTACAACCACTACaactaaaaacatgaaaatatgtgTAACCCATTAGAGACTGGTTTCTGTAGTACAACAAATGTTTCAATATAAACTAGGAAAGgctgtaatgtaattttaaacttaatttgagTGCTGCCAATGTGCTTTTTCTGCCTTTAGTCACTATAAAGACAATGTAAGAATGCTGATATGAAACTTGAATGAAGGATTATTGAGGCCTTCATTTTAGCATCAAGCAGGTACTGTTTGGTCCAGTAGGTGGTAGTAGATACACATAGAAAGTACAAATGTAGGCActataaagtaaaatactttaacaCACGTGTGCTGGTGGTGTGTTGGCTAGCTTGTTTTGtagtcttatttttaaaaaagtacatttttctaCACCCCTTAAAAGTTTAACATACTacaaaacagcattttattttaagcttgtggaagaatattattttatttaagtgagCAAAAGATTAACTGAAGAAAGAAATTAATACTGGGTGTATTAATCATACAGTGGGTGAATTAACAAATCTACTCAGTAGTAAAACCAGGATAATGTTATTAAGAATACTAAGTAGTAATATAATGCAGTAAGTGTCATGAagatattaatattcatatgtCATAATGCCATTTTTTCAGGGTGGGGGGCACTGGATTGAACTGGTCTTTTACCAAGTGCTGTAACATTCTGATATAATGGCAAACAAGAGATCAAGTTCAGGGCACTATAGGTGTGGTACAGTACCAAGCTATATAATCCAAATTCAAATTCCTAGAATACTTTTTCCTCCCACTAAAAATAAGAGCTTTGATTTATGTTGGAAAGTGCTGTATCAGTCTGTTCCCAGGCCTCAAAGTCAGGTGTTAAAATACATTGGAGTAAAATTGGAGTATCAAGAGCCTGAACACACCCTCAAGTTCGTAGTGTAGAACTTACTTTCTTTGCTCTTAGTGCATAACTGCATTGAGCTTCCAGTTCTAgctgtttcagaaaatgtctgTGCTCCTTTATAATGTCAGAACTGTTTAGTGTTTCCAGGAAAAGCCATCAGCTGGTGCAGACACTAGGTTGGTCTTGTGAATGAGCGATTGATGAAGCAGCCTCAGTTTCGCTGCGAAGAACCGAAATTGCTGCGCTATAgcggaaaataaaatgtgatgatGAAACTGCTTCCCACCCCTCATTGGAAATGAATGGCACACGACCCCTACAGACAATGCTTCGCTGATAGATTTGCAAGGGA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75383 lncRNA downstream 7726 6154918 ~ 6155224 (-) True G60271
TU75374 lncRNA downstream 48802 6111349 ~ 6114148 (-) True G60262
TU75370 lncRNA downstream 63039 6099445 ~ 6099911 (-) True G60258
TU75364 lncRNA downstream 83079 6079609 ~ 6079871 (-) True G60252
TU75349 lncRNA downstream 107128 6055549 ~ 6055822 (-) True G60237
TU75431 lncRNA upstream 101795 6274269 ~ 6276032 (-) True G60311
TU75437 lncRNA upstream 128182 6300656 ~ 6358939 (-) True G60317
TU75473 lncRNA upstream 270801 6443275 ~ 6444733 (-) True G60345
TU75488 lncRNA upstream 291074 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA upstream 291074 6463548 ~ 6466586 (-) True G60348
AMCG00019997 mRNA downstream 375494 5769073 ~ 5787456 (-) True AMCG00019997
AMCG00019995 mRNA downstream 453087 5688531 ~ 5709863 (-) True AMCG00019995
AMCG00019996 mRNA downstream 547494 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019994 mRNA downstream 588264 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019990 mRNA downstream 781986 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00020003 mRNA upstream 5782 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020005 mRNA upstream 13757 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020012 mRNA upstream 135059 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020013 mRNA upstream 156534 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020011 mRNA upstream 170313 6342787 ~ 6344692 (-) True AMCG00020011
TU75228 other downstream 870277 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 884659 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 897025 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1101673 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2682841 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 278148 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 291074 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 291074 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 295814 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1268329 7440803 ~ 7562592 (-) True G60516

Expression Profile