RNA id: AMCG00020011


Basic Information

Item Value
RNA id AMCG00020011
length 912
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00020011
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6342787 ~ 6344692 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCATGAATGGGACATCCCGGAGTGGGAAGGCTTGTTGCCAAGGTATGAGCACTGCAGCTTCGTTCCTGAGAGCAGTCCTAACAGCCTGTGGGTGTTCGGAGGTGCTGAGCAAAGTGGAAATCgcaactgtgtgcaagtgataCAGCTAGAGACAGGATCCTGGAGGAGTGTGAAGGTGTGTGGAGTGCCCCCTTCACCTCGGACCTACCACACCTGCTCAGCGTGTATCGGGGACAGACTGTACGTTATCTCGGGGGGGGATCTGGGAGCCGCCCCGGTCGCTGACCCCCAGCTTCACGTCTTTGATGCAGCATCCCTCACATGGTCTCAGCCAGAAACCCAGGGGAAGCCTCCGCCCCCCAGGCATGGCCATGTCATAGTGGCTGTGGGGTCCAAGCTCTTTGTTCACGGTGGCTTATCTGGGGACAGGTTCCACAATGACATGTACTGCATTGACACCATGACCATGAAATGGGAGCGGGTGAAGGGGAAAGGAGACGTGCCCCCAGCCTGCGCCGCCCACTCCGCTGTGTCCTGGGGGAAGTGTGTGTACATCTTTGGAGGAATGACGGCTTCTGGTGCCCTTAACTCCATGTACAAATATCACATCGACCGTCAGTGCTGGACCCTCATCACATTTGATGGAGCCCTGCCTCCTAAAAGACTGGACCACTCCATGTGTGTTGTTCCCTGGCGCCTGAGGGACAAGAGCACCGTGTCACAGGCAAAACCGGGCAGAACTGCGGACCAGATGGAACCGGTGCAGAGTGGATCTACAGAGCAGCAGCCGCCGCCTGCGAACAGCAGCCATTCCAGCCCACAGGAAATAGCCCATCTTTGCTTTGTATTCGGTGGGATGGACACCGAGGGGGGGATTTACAATGACTGTACTGTGACAGTGCTTAATTAA

Function

GO: NA

KEGG:

id description
K20285 RABEPK; Rab9 effector protein with kelch motifs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75431 lncRNA downstream 66755 6274269 ~ 6276032 (-) True G60311
TU75387 lncRNA downstream 178040 6159577 ~ 6164747 (-) True AMCG00020002
TU75383 lncRNA downstream 187563 6154918 ~ 6155224 (-) True G60271
TU75374 lncRNA downstream 228639 6111349 ~ 6114148 (-) True G60262
TU75370 lncRNA downstream 242876 6099445 ~ 6099911 (-) True G60258
TU75473 lncRNA upstream 98583 6443275 ~ 6444733 (-) True G60345
TU75488 lncRNA upstream 118856 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA upstream 118856 6463548 ~ 6466586 (-) True G60348
TU75501 lncRNA upstream 142617 6487309 ~ 6489377 (-) True G60356
TU75527 lncRNA upstream 334486 6679178 ~ 6695776 (-) True G60377
AMCG00020013 mRNA downstream 9420 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020012 mRNA downstream 14157 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020005 mRNA downstream 142753 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020003 mRNA downstream 161126 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020002 mRNA downstream 170313 6162950 ~ 6172474 (-) False AMCG00020002
AMCG00020017 mRNA upstream 105935 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020019 mRNA upstream 122579 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020018 mRNA upstream 224363 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020024 mRNA upstream 524881 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020025 mRNA upstream 554192 6898884 ~ 6923473 (-) True AMCG00020025
TU75228 other downstream 1050114 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 1064496 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 1076862 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1281510 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2862678 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 105930 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 118856 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 118856 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 123596 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1096111 7440803 ~ 7562592 (-) True G60516

Expression Profile