RNA id: AMCG00020013


Basic Information

Item Value
RNA id AMCG00020013
length 1955
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00020013
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6329008 ~ 6333367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGTCCGTGTGTCCTGACCCCGCATCGGTTCCTCTGCTGGCCAAGGGAGAGATGCTGGCAGCCTTCCCTCTCTGTCCAGTGACCGAGGAGGACCTGTCTCAGAACCCCCACTTCTGCAGGCTGCTGTCCGCGCTCTCACAGCACATAGACGACACCGGACTGACCGTCGCGCTGAAGAATGAGCTGGAGAAGGCAGAGCGGGAGCTGCAGTTACAGAAGCTGGGCTGGCTGAGGTCTGAGAGTCTGTACCGACTATTGCAGGAGATGATCCAGGAGCACCACGTCACGAAACATCACTCCCAGCCCCTGCAAGAGGACAGCGAGtTCTATGAGACTCTGGAGCAGTGTCTGCTGGTGGCCCAGTGTGCGAGGATGCTGGATCCCAGTCCAACCACAACGCAGGTCCAAGCACAGCTAATGGGACTCACCCCAAAGCATGTACTGGATCTCATGCCACCAGAGCTGGACGTGAAGCGAATGAAGCAGCGGCTGGTGCGAAAGCTGGAAGAGAAGCTACAGAAGAAGTGCTTCACTCTTCTCACTTACTACCAGCCAGACTGGGAGATGCTGGAGAATGAGCGCAAGAGGCtggagagccagagagagagaggcagggagcgCGCGGTGATGCTGCAGCGCCAGGCTCACGGCTACCTGACTGAACTGCTGGGTTGCATGCAGATCCTGCAGTCGCTCATCCTGGATCACCGGCTGAAAGCTCAGAACGAGTTGGACCGCAAGAAGACGGAGTACATGGAGGCCAAGTGTCAGATCATCATCCCGAAGATTAGATTGGAGATGTTGCAGGTCCAGCTGGATACCTATACACCTCAGAAAATAGCTGTGCACCGTAAAATCAGGGACGCTCTGAAATCGGAACTGCAGCGAGAGGAAGCGGAGAAACAGTCCGCTGAGAGAATGCTGTCCTCCTTTGAGATCCTGGGGCAGGACTTTGAAGTGCTGGTGAAGGAGTACGCCCAGCTGCGCCAGGAGATCGACAATAAGAAGTGGGCTTTGCACGAGTTCTCCCAGCACAACCACTGAGCCGGGCGCCACACCCATCCTCCCCCACCATGGCCCAGTCCTCTGCACTAGGTGCTGAACGGGAACAGCGAATCCAGTTCTACACCTCTGGGGGTCTCTCTTCAAATGCACTAAAACATGAATGAAGTACTACACAGATTGTCATAATTCTGCTGCCTTGTTGAGCAAAAGGACACGCTGGAGAATTCTGGTTTGGATTGACAGGCAAAGAGAGAATTATCTTGTCCTCTTGTTTATTGGCAAAGCCCCATTCTTTCATTCTAGAAGTcagaattcaatttaaaaatggaaaacggGACAAATAATGAACATGACATTTGACCCAGTTTCCTCTTCCTAAGACTGTAAGAGTGTTATTCCTTTGGGACAAGACTACTGAATTATAATTCCACAGTTTTCCTCgtaatatttgaaatgaaatcatAATTTTGAAGATTGTGTGGTAATCGGTGAGAGAGAAGCTGTTACTccatgttaattttaaaatatttgatataagatattttttttttttacgacaATAAAACTTAGAACTTGTGTATctacatgtatttttgtgtttgttttatgtgctCTGATCTCCACATTTGgtaacagttatttatttttttacttttatattttactctggaataatacaatattgcaTCTAGTCCATCATCAGACAAAAACGTTTTTATACTTTTACAAAGTTTTCATTGTCATTAAGGAACGACGAGAGAGGAAGCCAAATGACTAGTCTATTAACCTTATGTCAGTTTTGAGGTGATCTATAATCTAATAACATAGATGTTTATTTGGTAGGAAAATATAGTTGTGTGTTCActaaaactacaaaacaaaccactATTTAATCAGTTTATTAAAACTAATGTATATTCTAAAACAATATCTTGAAATAAAGCAAACTA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process

KEGG:

id description
K16587 HAUS4; HAUS augmin-like complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75431 lncRNA downstream 52976 6274269 ~ 6276032 (-) True G60311
TU75387 lncRNA downstream 164261 6159577 ~ 6164747 (-) True AMCG00020002
TU75383 lncRNA downstream 173784 6154918 ~ 6155224 (-) True G60271
TU75374 lncRNA downstream 214860 6111349 ~ 6114148 (-) True G60262
TU75370 lncRNA downstream 229097 6099445 ~ 6099911 (-) True G60258
TU75473 lncRNA upstream 109908 6443275 ~ 6444733 (-) True G60345
TU75488 lncRNA upstream 130181 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA upstream 130181 6463548 ~ 6466586 (-) True G60348
TU75501 lncRNA upstream 153942 6487309 ~ 6489377 (-) True G60356
TU75527 lncRNA upstream 345811 6679178 ~ 6695776 (-) True G60377
AMCG00020012 mRNA downstream 378 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020005 mRNA downstream 128974 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020003 mRNA downstream 147347 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020002 mRNA downstream 156534 6162950 ~ 6172474 (-) False AMCG00020002
AMCG00019997 mRNA downstream 541552 5769073 ~ 5787456 (-) True AMCG00019997
AMCG00020011 mRNA upstream 9420 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020017 mRNA upstream 117260 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020019 mRNA upstream 133904 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020018 mRNA upstream 235688 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020024 mRNA upstream 536206 6869573 ~ 6896989 (-) True AMCG00020024
TU75228 other downstream 1036335 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 1050717 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 1063083 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1267731 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2848899 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 117255 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 130181 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 130181 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 134921 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1107436 7440803 ~ 7562592 (-) True G60516

Expression Profile