RNA id: AMCG00020017


Basic Information

Item Value
RNA id AMCG00020017
length 1014
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00020017
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6450622 ~ 6461428 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAAGAACACCCTGTCGTCGCGGTTCCGGAAGGTGGACATCGATGAGTACGACGAGAACAAATTCGTGGACGAGCAGGAGGAGGCGGCCGAGCAGCAGGGGCCGGACGCCGCCGAGgagcGGGCACAGGGAATAGTACTGCGGGTCCTGACGTCCTTTAGAAGCAGCGAGATTGAGCCAGCTGTGAAATCTTTAGACAAGAACGGAGTTGACTTGTTAATGAAGTACATTTATAGAGGCTTTGAGAAGCCCTCAGAAAACAGCAGCGCAATATTGCTGCAGTGGCATGAAAAGGCTTTTGCGGCGGGCGGCCTAGGATCCATTGTTAGAGTTCTCACAGCCAGAAAGACTGTTTGAAAGACTGTAAAACTCTGGCCCAAGACGACGACAAAGCGGAGAACGAAAAAAAACGGACAGAGCCAGGGACGCGGTCTTTGAAGGGAACGATTATTATACAGTTATGATGCCATTCTTCCAGAATTCTAAATTTatgaaagatttaaaagaaaatattattttgagtgaagaaatacaaatgtatgtttgaaTGCTTTTTATCTATTGAAGTGAGGGGGACATTTCTGgtatttaatgtactttttttttttccttcttgatCATATGCAAGTTCTTGCACATCCTCCCATTCCCTTCctatcttgttttgtttgtttttacttcagaGAGGTTTtaaaagtggggaaaaaaaaacaaatttaaaaataaaaaactgacaATGACTGCCTGGGGGGGAAAGCCGCCCATGCAGTGCCGGCAAGCATCACCAGATGAATTACTGTATGACGTACAGAAGGGTACATGGCTGGTGACTTATTGGACTGGCTCAGTATTGAAGGATAgattttattcttattgtttttcttttctcactCATTTTTTGTACAGAGAGaagtacatttaatataaagcaATGGTGATGATTTGAATAGTAGGGTGATTTCAGTGTAAAGTGCCTGCTGCAATAAAGCTCTTGGATTATCTTTATTGAAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75473 lncRNA downstream 5894 6443275 ~ 6444733 (-) True G60345
TU75437 lncRNA downstream 91688 6300656 ~ 6358939 (-) True G60317
TU75431 lncRNA downstream 174595 6274269 ~ 6276032 (-) True G60311
TU75387 lncRNA downstream 285880 6159577 ~ 6164747 (-) True AMCG00020002
TU75383 lncRNA downstream 295403 6154918 ~ 6155224 (-) True G60271
TU75488 lncRNA upstream 2120 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA upstream 2120 6463548 ~ 6466586 (-) True G60348
TU75501 lncRNA upstream 25881 6487309 ~ 6489377 (-) True G60356
TU75527 lncRNA upstream 217750 6679178 ~ 6695776 (-) True G60377
TU75537 lncRNA upstream 336481 6797909 ~ 6800750 (-) True G60387
AMCG00020011 mRNA downstream 105935 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020013 mRNA downstream 117260 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020012 mRNA downstream 121997 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020005 mRNA downstream 250593 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020003 mRNA downstream 268966 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020019 mRNA upstream 5843 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020018 mRNA upstream 107627 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020024 mRNA upstream 408145 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020025 mRNA upstream 437456 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020026 mRNA upstream 525108 6986536 ~ 7008056 (-) True AMCG00020026
TU75228 other downstream 1157954 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 1172336 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 1184702 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1389350 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2970518 3479782 ~ 3480109 (-) True G59806
TU75489 other upstream 2120 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 2120 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 6860 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 979375 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 2352831 8814259 ~ 8828109 (-) True AMCG00020066

Expression Profile