RNA id: AMCG00020024


Basic Information

Item Value
RNA id AMCG00020024
length 3071
RNA type mRNA
GC content 0.48
exon number 22
gene id AMCG00020024
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6869573 ~ 6896989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAACATGCAGAGCGGTCTTCTCTCAGGAGATAGGAAATGTCACTGCTGATGTTGACTTCTCTGGCTTTGACTGGGGAGATGGGAAAATAACTGGGTTTAACTCCCAAAATGCAGAGGAATAGCACATAGGAGTGGACAAGctgttAAACAACCCAAGGCTTAACATGACTggaaacaacatgaaatcacCGTTCCTGTTGCATTTATTGTTGGTATGCAGCATTACTGAGAAACATTGTTCCTGGGCAAGTCCTCGCTTATGGACCTTTCAAGatTTCAATGATACTCTATCAATTCTAGAGACGCCTCAgaacatttttcagtttgtaaatGAATCTCTGGACTTTTGGCAAGCAAACCGCTTCTGTCAACGTCAGTTCAGTGAGTTGCTTTGTGATAACTCGAAGGCTGATGTTGAATATGCCACCGAGCTGTTGCAAGCCGTTCAAGCAGAACAGCAAGTCTGGTTAAAGGATGTTGCCCATCAAATCTGGAAACCCCCACCCTACATTCCCACTTCTGCCTTGCACTTCCAGAAGAAAGCACATGCGATGTATGCCAAGGTGAACATCCACTTCCCCCCTCTACCGGCAGTCACTGTGTGCGCTCGGGTCCAGTGGGACCGGGTCAACGCCGGAGTGTCCACAGTCTTCTCCTATTCCACTCCCAAACTGATCAATGAGTTTCAACTGCGAGGCCAGCCAGATGAGCATGGGAGCATAATGATGGCTTTGCTGGTGCATAGCAAGCACATGCCCTACAAGGCCTTGTTCAAGAACGATGGGAAGTGGCACCATGTTTGTGTCACCTGGCAAAAGAAGGATGGAAACTGGGCCATTTATGTGAATGGAGAAAGGAAACATTCAGGGAATGGTACAGAGATCTCCAGGGATATTTATGGTTACGGGATCTTTATTATTGGGCAAGATCAAGACTCATTTGGAGGTAACTTTACTGAGCCCTTCACTGGGAATATCACATCAGTGAGCATATGGAATAACATCCTACATGAGCAAGAAATCAGAAGTCTCAGTTCCTGTTCCCCCATCAAGCGGGACCTGCTATTTAATTGGAATTTAAAGCAGATGACCATTGAGCACTCGGTTCAGACGTTCCCGGCAAACCTTTGGTGTGAACACATGGTCCTGGTTCAGAACACTGCAAAACCATTCACAGTGTTCCCTCCCAACCACAGGTCCAGCACAGCACCATCTCCTGCGAAGAGACCCTGTCCTTTGTGTGCAAACACAATAAAGGTTGGAGAAGGCTTCTTTTCAAACATCCCAAAAGATCTTAGCTTTCCAGAGGTGCACACCATCCTGAACATCTCGCAACAAGCCCTCAGACATGCTGACAAGGACTTGCATCCCTTAGACCTCCTGAGTCTCGTCCAGCTGCTCTCCCAGGCATGTCACGTGCAGATTGGAGGCAATGAGAGTAAAGACGCCATCGGGAACCTGAGCGCGCACTTCATCACGATTGCAGGCAGTCTGTTCAATGAAGAGAACGCCAATGATTGGCTGGCCATAAAGCAGATCGTAAATGGGCCCATGACTGTGGTCCAGAGCATCGACAGGATGGTTGCCAATCTAAACCCGCAGCTAATGGCTGGAAAGAGCAAGATTGCCATTGACAGAAAGAATATCAAATTGGAAGTCCAGCACAAGACCCTTAGCCTGGAGGGGGCCGACAAAGATTTCTATGGGCTTACGTCTACAGACGAGGCAGGAGTTGACAGTATTTCGATTCCAGCAGACATGATCCAGAAATTTCATCAGAGAGGTGTCCAGAATATCACCTTGATCAACACCTGGTATGGCTCTTTGCTCCCTTTGTTCAGAAGTGAGAACAATACCATACAGTTTCCTGCGGTGATCGATGGAAGCCAAAAgTATCTGGGCACAGTGCTGGGGTCCTCAGTAATTTCGACTACGGTGCTTGGTGATAATCATCCAATGAACACCTCTGTATACTACGAACTTCAGCACAGACTGAAGACCCCTGCAGGAACCAAATATGAGCCTATTTGTGCATTTTGGGATTTTAACCTCAAGCCTGAGTCAGGAGGGAGCTGGTCTACAAAAGGCTGTTTTGTCATCTCCTTGAGCTACAAATCTACATCCTGCTTTTGCAACCACACAACCAACTTTGCCTTGCTGTTACAAATATATGAAGTACAGGCGCTGTGCACCGCCGTGACGGCCCTGCTGCACCTGTTCTTCATGGCTTCCTTCACTTGGATGCTGGTGGAGGGACTGCTTCTGTGGAGCAAAGTTGTGTTGGTCAACATCAGCGAAGACCGCAGGATGAAGCTCTACTACGTCATTGGCTGGGgttTGCCAATTGTTATTGTTAGCATCACCTTGGCAACTTCCTTCAACAAGTATGTGGCAGACAATTACTGCTGGCTTAACACTCAGAATGATATCATTTGGGCTTTTGTTGGGCCTGTTGTCTTTGTCCTCGCCGTGAACACAGTGGTGCTGTTCCGGGTGGTGACGGTGACCGTTGCTAGCGCGCGGAGGCGTTCAAAGATGCTGACACCGAGCAGCGCCTCAAAGCTCCATGCCCTGGACCTCACTTGGGCAGCGACCAAACCAGTGATAATACTCCTGCCCGTGCTTGGGCTGACCTGGATATGTGGGATCTTGGTTCATCTCACAGTTGTCCTGGCCTACATTTTCATCATCATGAATGCGTTTCAGgGTCTCTACATATTCCTTGTGTATGCAGTGTATAACAGCGAGAACTGTTCCCAGCCAATAAGTTTCCTAACTTCCCAAAGAACTACGAGCTCCTGGGATAATGGCAAAGCTCCTCCTTCCACTTCTGAAAGCAACGAGTCTTCGACCGTGCGCTCTGGTTCACCACCTAAAAAATCCCTCGTTATTAAAAATGAGAGCTTCAGAAAGGACAGCTTTGTGATTTTTTCTCTGAAACCAGACTCTGAAAACCAGGGTGATTACCAGCGGGGGCACTCACAGGGCACGCTCCTCCGCTGGAGTTCAGGAGTGTTCAGGGCTCTCGCACGGGAGAGCAGACTGGGTCGCATCGCTCCTCGTCATTGA

Function

GO: NA

KEGG:

id description
K08466 ADGRD2, GPR144; adhesion G-protein coupled receptor D2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 68823 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 173797 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 380196 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 402987 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA downstream 402987 6463548 ~ 6466586 (-) True G60348
TU75725 lncRNA upstream 675608 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 956012 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 1147620 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1896979 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1901975 8798964 ~ 8799167 (-) True G60725
AMCG00020018 mRNA downstream 278470 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020019 mRNA downstream 399107 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020017 mRNA downstream 408145 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020011 mRNA downstream 524881 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020013 mRNA downstream 536206 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020025 mRNA upstream 1895 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020026 mRNA upstream 89547 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020027 mRNA upstream 215824 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020035 mRNA upstream 467065 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020034 mRNA upstream 532023 7429012 ~ 7444494 (-) True AMCG00020034
TU75494 other downstream 398139 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 402987 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 402987 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 415975 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1576900 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 543814 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 1917270 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1942222 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3858479 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4798702 11695691 ~ 11701645 (-) True G61269

Expression Profile