RNA id: AMCG00020025


Basic Information

Item Value
RNA id AMCG00020025
length 4079
RNA type mRNA
GC content 0.48
exon number 27
gene id AMCG00020025
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6898884 ~ 6923473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCGATCCGCGAGCGTGAGCAGCAGCCACTTCCGGTCTCGCTCAGCGCGCGCTCTCACGCAGTTCTCCGGGGGGGGGCGGCGCGTCTTTGATCTCGGACACCTCCTCCCCCTGAAGAAGTTTAAATCCACAGCTTTCTTTGTGGTGAGCAATAAGAAAGCTGGTGAGAAGAGTCCAGAGGAAAACCAAGAATTTATGAAAGAGGCTAGCAGCAAGGTGATTTCGGCTCCACAGCGTCTTTCACACATTGGGCTGGAAGCCAGAGAAAGGTTCAACTCtacagagaaggacaggagCCATGTTGGGGAGAATACAGCTGTCACTGTGGCAATCCGTGTCAGGCCACTTAACGTAAGGGAGCAGCGGCTGAATGCCAAGTCTGTAGTAACTGTATCTGGACAGGAAGCAGTAGTTCACCATAACCAGCAGaaattttctttctcctttgaCTTCGCTTTCTGGTCTTGCGATGACCAGATGGATACTTACGCAAGTCAGGATATAGTTTACAGCAAACTGGCACAACCACTTCTTAATAAGGTTATTCAAGGATATAACACCTGCCTCTTTGCTTATGGACAAACTGGATCTGGAAAATCGTACACaATGATGGGATATGGAGATGAAGTTGGAATAATTCCCAGATTTTGTGAAGAAATATTCCTCAAGTCTTCCCAAGAACCCCTGCACAATGTTACGTGTCACCTAGAAATGAGCTATTTTGAAGTctataatgaaaaaatacacgATCTTCTCTCATCAGACAAAGAACCAAGTCAAAAAAAGACGTCTCTTCGTGTCAGAGAGCATCCAGAGTTGGGGCCGTATGTAGCTGGGCTTTCTTCGTATGTGGTGGGCTCCTTTGCAGATGTCCAGGCCTGGCTTGAGCTGGGAAATAAACAAAGGGCCACCGCAGCCACTGGCATGAATGACAAGAGTTCCAGATCCCACTCGGTGTTCACTGTGGTGCTGACTCAGACAAAGAGAGAGGAAGTGGAAGGCGTTTCCCATGACCATACAGTGCGGAGTCACATTAATTTGGTGGATCTTGCAGGCAGTGAACGTTCCACGGCTGCACACACGACTGGCATAAGACTTAAGGAGGGAGCCAGTATAAACAAATCATTGATGACACTGGGAAAGGTCATCTGTGCTCTTTCTGAAGCCTCCCAGTCCAAGAAGAAAGCATTTATTCCTTACAGAGACTCTGTGCTAACCTGGCTCCTGAAGGAGAGTCTCGGAGGCAATTCCAAGACCGCCATGATTGCAGCGGTCAGTCCGGCTGCCGTCAACATCGAGGAAACCCTGAGCACCCTGCGATACGCCACGCAAGCTCGGCGCATCATCAACGTGGCGAAGGTCAATGAGGACTCCAGCGCCAGAATTATCAGGGAGCTCAAAGCAGAAATTGAGAAGCTGAGAACCGCTGGGCGGTGTAGCCAAGGAATGGGGGCAATGGAGTATGATGCCAACCTGCAGGAGATCCTGTCACTGAAAGAAAAGCTCTtgcagcaggagagagagcTGACGCAGGCCCAAGAGGAATGGAAAGTGAAGCTGGCCTTGGCAGAGCAGTGTAAAATGGAGGAGGCAGAGGGACTGCAGAAGGCAGGAGTTTCCTTCAAAGTGGACAATCGGTTTCCCTACCTTGTAAACCTGAATGAAGATCCCCAGCTCTCTGAGATGCTGCTGTACATCATTAAAGAAGGCCAGATGAAAGTGGGGCGGCTCACGGCGGGCTCCAAATATGACATCCAGCTAACGGGAGCCCTCATCGCGGAGCAGCACTGTCTTCTtacaaacacaaatggaaatgtcaCTTTGACCCCAGTTGAAGATGCGAAGACCTACATTAATGGAGTCCACCTTACACAACCAGTCACACTGCATCATGGAGACCGTGTGGTCCTTGGTGGGGATCACTATTTTCGCTTCAACCACTCCGTGGAGCAGAGTGGGTACCGTGCATCTGAAGGCCCAGGGGGCACCAAAGACGTGCACAGGGACTTTGAATTTGCCAAGAACGAGCTGCTGGATGCCCAGAAACAAAGAATTGAGGCTGAAATTGAAGAAGCCAGACAACAGGCTCAGCAGGAACTGATGCAGGAGCTGCAGACGGCGCGAGAGCTCGCCCAGCAAGAGCTGTCAGCCCAGCGCCGTCAGTACGAGGATCACATCCgggagctgcagagagagatgGAAGAAGAGTTAAACATGAAGCAAGACATTCTGACCCAAGAGGTAGAGCAGAGAAGACGCACTCTTCAGATCTATTTAACTGGGCCGTTCACACAGGAGCTGGAGGCGTGCGGTTTGAGGCACCATAAGCTGATGGAGGCCCTGCagcaggagaaggagaagcTGACACAAGAGGTGGAGAAGGTGCAGCAGGCCCGAGCCTCcaaagaggaggagaggaggagagctTTCATACAGGTGTTTCAGGATGAGGCCCCAGCAGTGGGTGCTGGGTGTGTGATTGCATGCAAACGGTTGATTCAGTGTGTTGTGGAGGGGCTGCAGAAGCAATGGGAAGCCACAACCTTGACTGATCAGCTTTTGCTAGATCTGCAGGCTGTCATCGGCTCCATCAAGATTATTGCAGAATCATACACGCAACTACAGGAGAACTCCCCCCACACAGTTTTTAAGAGCCCAGACATCCAGAACCATTGCTTGACTGCAGCGACCAGCATGAACCGCTTCATGACAACTCTGCAGCTCTGGGGGACTTGCATACCGGAAGCCACTGTGCAGAGTACCGTCTTGAATGGAATCTCGGCTCAGCTCAAACTGCTCGGAGGGAATCTTATGCTCTTTCTCCATGGTTGTGAAAGCGATATTGAGTCTATGGTGGCAGAATCAAGAGACAAGATGGCCCAGTCAGCTCTCGCTATCGCCAGCCAACTGGGCAGGCTTGTGGTCTCCATGGAGCCCGAGGTCCGTTTTACAATGGCAGAAAAATGCGGTCCTGAACAAGCAGAGcAACTTGGTAACACTCTCAAAGAGGCCTTCGTTCAAGGAGCCAACTGTAGCATTGACGGTCAAATAGCTGCTGGAATTGCGGAGCTAGAAAGCATGGAATTACAGATTCAGAATATCCCTTTGGAGAAGATGGAAGAAAAGAAGACTTCTGTATTCTGTGCATACCTTACCTCCCTCAGACTCCTCATAGACGGAACTAACTTATGCTGGAAAGAAATTCAGTGCCTTAAAAACAGCAAGTCTGAAAGTATACAGGACACCTTCTTTAAAGAATATCTGATGTTCTGTACAaccttgaatttgaagctgaaTGAACTTGCCCAAGCAGGAAAAGGTGCCTTTGCATTTGTAACGGAGCCTTTTAAAGAAGAAGCAGCTCTACAGATGCTGAAACAGATGGAGTCGCTGCCAAACTCTATCCAGACTCTCCTGGAAACGCTTGGCTCTGGGTGGTCTGCGGTGAATGATGAATCGCAGGACCCCACTGTGGCCGACCGCTGGAGTGCCCTGAACAATGAGGTGGAGAAGGCTGCCAGACAGCTCAATTCTTCTGCTCAGGACTTAAGGAAACTGCTGGAAAGGCAAAGGGGGGTCGATAGCCCGAATGGAGCAGAGGGTGCACGAAGGTACAAAAGACAATTACCCATAACCCTCAGCGTGAAGCCGAAGTGGGGGAGGAGTGGGACGCCTGTCCGGGAAGTGATCGTCAAACTGAATTGTCAGCCGTTAACCAGAGAGGCCTTCACTATAGAGAGCAAAATGTCTTGAGAATCATTAAGTCGTTATCAGTTTGACGTCtgatttttgtcctttttttcttgcttaAATAGACTTCTATCCAGATTTGAATATTAAATTGCATTGATAAATTTGTAATTATGCCTTGTATGGTTGAAGATGGAACACGttttcaattacacatttaaaagtttaaacaaaataaacaatgttcccttttaaaatgtataatgggGGGGGATAATGTATTTGGGCGTATTGATTTTcttataatttaaagaaaaaactatttgtggtattttgaagtattttataaTCTAATCTAAAATAAAGAGTAATATATTTGTCCCTTG

Function

GO:

id name namespace
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 98134 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 203108 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 409507 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 432298 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 649124 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 929528 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 1121136 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1870495 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1875491 8798964 ~ 8799167 (-) True G60725
AMCG00020024 mRNA downstream 1895 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020018 mRNA downstream 307781 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020019 mRNA downstream 428418 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020017 mRNA downstream 437456 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020011 mRNA downstream 554192 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020026 mRNA upstream 63063 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020027 mRNA upstream 189340 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020035 mRNA upstream 440581 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020034 mRNA upstream 505539 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020033 mRNA upstream 522008 7445481 ~ 7453075 (-) True AMCG00020033
TU75494 other downstream 427450 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 432298 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 432298 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 445286 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1606211 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 517330 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 1890786 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1915738 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3831995 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4772218 11695691 ~ 11701645 (-) True G61269

Expression Profile