RNA id: AMCG00020026


Basic Information

Item Value
RNA id AMCG00020026
length 838
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00020026
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6986536 ~ 7008056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTAAAAGATCTCATTGGCATGTTACTATGGAAGGACAGCACAGTCACCATCAGCACAGTCTAGAAGACCAGAACAAACTCCTCTATAATCTCCCTGGGCAGGATTACCAGCATGAAGGCCAGAGAAACATGCCTGCCTACCAGTACTGCTGCACCCTGGCTAATTTCAGAATCGAGAAGAAGATTGGCAGAGGGCAGTTCAGCGAGGTGTACCGGGCGACGTATCTCTTTGATGGAAAGCAGGTCGCTTTGAAAAAAGTCCAGATTTTTGAAATGATGGACGCCAAAGCAAGACAAGACTGTATCAAGGAAATAGACCTTCTTAAGCAATTGAATCATCCCAATGTTATTAAGTATTTGGATTCTTTTATTGAGGAGAATGAATTGAACATTGTTCTAGAATTAGCAGACGCGGGTGATCTCTCTCAGATGATAAAGTGTTTCGGCAGTGGCTGTGTGACTGACATGGGTTGGGGGTGCCAGATTGCTCATTGCCTATTCCctcatcttttatttattcttgttccacagtattttaaaaagaagaggCGACTCATCCCTGAAAGGACAATATGGAAATATTTTGTGCAGCTATGCAGCGCGGTGGAACACATGCATTCCCGCAGAGTGATGCACAGGGacATAAAGCCGGCAAACGTGTTCATAACCGCAACTGGGGAGGTTAAACTGGGAGACCTGGGACTGGGCCGGTTCTTCAGCTCCAAGACCACAGCAGCACATTCCTTAGGTAGGGAGAGAATTGAGCCGGGTCACATTCGGGGGGCCAGTGTAGGGCGATACCACTACGctactgtttgtcttgtgttcACTCTTTGC

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 185786 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 290760 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 497159 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 519950 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 564541 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 844945 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 1036553 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1785912 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1790908 8798964 ~ 8799167 (-) True G60725
AMCG00020025 mRNA downstream 63063 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020024 mRNA downstream 89547 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020018 mRNA downstream 395433 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020019 mRNA downstream 516070 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020017 mRNA downstream 525108 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020027 mRNA upstream 104757 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020035 mRNA upstream 355998 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020034 mRNA upstream 420956 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020033 mRNA upstream 437425 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020039 mRNA upstream 499305 7507361 ~ 7515691 (-) True AMCG00020039
TU75494 other downstream 515102 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 519950 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 519950 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 532938 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1693863 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 432747 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 1806203 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1831155 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3747412 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4687635 11695691 ~ 11701645 (-) True G61269

Expression Profile