RNA id: TCONS_00009402



Basic Information


Item Value
RNA id TCONS_00009402
length 840
lncRNA type sense_intronic
GC content 0.39
exon number 5
gene id XLOC_004754
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26894321 ~ 26896616 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTCTTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAGGAATTCAACCAGATAGTTAGCAAAAATTATATTGGTCTCTTGATCATCACTGCCCACAACTGATTCAGATCTTCAGATGTTCAGGTCACAGAGAGGTCTCACTGGACAGATTTTTATCTACTACAAGATGTCAAGGCCTCTGACCTCACTGACATGCGAGGTGTTTTCATTTGAGTGCTTCCAGTAGTTTGAAGCAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATATGCTCGTTGGAATTCTTAACCGAGAAAATGACGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATCCCCTGTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAAACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCGTGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCGTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACTGTGagttaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCGATAATACTACAATGTAATAATGTCTTGTGGTTGTTTATtatttggatatgtttgtaaaaaattattgaaatattttaaacaagtgttttaataagatttataacaataaatatcGACAAATTGTTATACAAGGC

Function


GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0021546 rhombomere development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0031099 regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007423 sensory organ development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153141

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00010944 lncRNA upstream 60129 26737431 ~ 26834192 (+) True XLOC_004752
TCONS_00010943 lncRNA upstream 168540 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA upstream 202270 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00010942 lncRNA upstream 301023 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA upstream 301023 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00009425 lncRNA downstream 317144 27213760 ~ 27229858 (+) False XLOC_004765
TCONS_00009431 lncRNA downstream 335128 27231744 ~ 27232651 (+) False XLOC_004766
TCONS_00010945 lncRNA downstream 1480414 28377030 ~ 28381255 (+) True XLOC_004777
TCONS_00010744 lncRNA downstream 1721085 28617701 ~ 28617965 (+) True XLOC_004779
TCONS_00009458 lncRNA downstream 2036908 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00009396 mRNA upstream 168273 26621906 ~ 26726048 (+) False XLOC_004750
TCONS_00009398 mRNA upstream 168273 26632448 ~ 26726048 (+) False XLOC_004750
TCONS_00009397 mRNA upstream 168540 26622010 ~ 26725781 (+) False XLOC_004750
TCONS_00009400 mRNA upstream 178375 26706745 ~ 26715946 (+) True XLOC_004750
TCONS_00009399 mRNA upstream 196736 26670778 ~ 26697585 (+) False XLOC_004750
TCONS_00009404 mRNA downstream 125363 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009403 mRNA downstream 125363 27021979 ~ 27028808 (+) False XLOC_004755
TCONS_00009405 mRNA downstream 125901 27022517 ~ 27027017 (+) False XLOC_004755
TCONS_00009406 mRNA downstream 128060 27024676 ~ 27026373 (+) True XLOC_004755
TCONS_00009407 mRNA downstream 137978 27034594 ~ 27060129 (+) False XLOC_004756
TCONS_00009383 other upstream 1246078 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009380 other upstream 1416415 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 1642534 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 2328729 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 2475981 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009419 other downstream 238253 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 260327 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 322377 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 334679 27231295 ~ 27234421 (+) False XLOC_004766
TCONS_00009459 other downstream 2048916 28945532 ~ 28945646 (+) True XLOC_004786

Expression Profile


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