RNA id: AMCG00020033


Basic Information

Item Value
RNA id AMCG00020033
length 5466
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00020033
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7445481 ~ 7453075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGCTCATTTATCAGAAACCACATGGTGTCATTAACAGGCAAATAAGCACTATCTTGCTGATTTCGTTTTTATGTTTATAGCCTTCCTTTTCCTGGTAATAGTTAACATGCAATTGAATTGGGGAATGATGCTGCCTCTAGGTCATATCATGAAAACAGTCTGGCACATGGGCTAGAGGCAGCCCATGatcagaaatgaaaacattgAGGCTGCTTTGGATTGGACTGGGGATAGCCACCACGCTTGCAATATTGTTTTGCTACAGTCATGTGACAAAACATATGTGGACACCTGTGCCCAACAACGGTCTGCATGGGTACATTCGAATCTCCACAGGGCAGTACCTGGATATCCACTGTAAGCAATGTGCCTTAGTATCCAGTTCCGGTCAAATGCTGAAGGCAAGGAAGGGGAATGAGATTGACCAGGCGGACTGTGTGATCCGCATGAACAACGCCCCTACCGTGAACTATGAGAGTGACGTGGGCAGCAAGACCACGGTTCGAATGGTCTCACACACTAGCGTGCCACTGTTGATCAAGAACGATACCTATTTCTTCAGGCAGTCAGCAGACACTGTCTACATTATCTGGGGCCCCGAGAGAAACATGAGACAGGATGGCAAGGGAAGAATCTTCAACGCCCTCTGGAAAATTGCTAGGAAGTACCCTCGTGCCAAGCTTTACACGATGACCAGGGAGAGGATTCTGTATTGTGACAACATCTTTCAGAACGAAACCGGAAGAAACAGGATGAAATCTGGGGCCTATCTGAGCACTGGGTTTTTCACCATGGTCCTGGCTATGGACATATGTGACAATATTCTAGTCTATGGGATGATCGACGATAGCTACTGCAGCCAAGCTAACTACTCGACCGTGCCTTACCATTACTACGAGAAGGGCAGGATGGACGAGTGCCGGATGTACAGAGCCCATGAGAGAGCCCCCAGGGGTGGCCACCGCTTCATTACAGAGAAGGCCATCTTTGCCAGATGGGCCGCCCGCAAACACATGACCTTCTCGCACCCTTCCTGGACAGATAAGAAAAGTGTTTCTTGAGGATTTGCTCTTGAAAGGCATTGCCTAAGGATCAGCAGCAGCATTCTGTTGCTTTCAGTGCCCATAAAACTGCGGCCATCTAACATACATTTCATGTATAACGAGCAAACCTCATGTGATGagagtttgtatgctttcaagCATCAATAATGCAATTTCATTTTTGCAGGATTTAATTCTGCAAGAGTTGGATTGACGTCTGTGCAATACATTTCTCTTCTATATGATCTTGTCTTTTAAAAGCCAGATTGCGGAAGATTAAAGGCAGTATTATATAACTGATGAGACATATGTTACGTATTGGGATTACATATGAATGACTGAAATTCTTGATGCGGTTTCCCAAACGAAATCAGTATTAAATTGTGCCAATGGAGTTTTACATGCCAaatctgtatttcagttttaaatcaaTGATCAATGATAGCATTATACTAGTGTTGTAATCtataatatgaatttaaaatatttaggtCGTTTACAGGTTTTATGTCTATAACCCCTTTTACAACCAAGGTGTGTACATTCGATCCCTGGGGGTCCAAGATTTTTTAGTTCAGCTCttgattttaaacaatgttttatataggTCTATCCCTTTTAGCAGCTGACGACAGACCATAAAGTACCTGAAATACCTGCATTGTTCCAGACCTCAAAAAACACACTGGAACATTAGTGTTAGGATATTACTATTACTAGTCTAGCCTTCCTGTCTTGTAAGTTAGCATTGTTGACCAGTTTCCCTCAGCATTTTCACTAACCAATCATTTCCCTTTTACTTGCTCATTACTGTTTCTAGACACCTGACAGGCATTATGTATATTATAGTTATGTGTCATATATGTAAGGGCCTATGGTGGATCAAAGAAGGTAGGCTAAAGAAAATATAAGGAAATGGTTAATGGCTTATTAATACCAATATAACAATAAGAGATAGATGCATTTCATAATACTACTGAGCTACAGTAGATGTTGTTTTATTGATAGCATGATCAATTCAGCGAATACTGAAGATAAACGAGTGCAATGTATGGGTAGTTACCTCGTTATGATGGAGACATAACCATTTTCACTTTGGCCAAATGACACAATTACAgttaactgtttaaaaaaaaaaaacatctgacagccagttatatatatattaattgttatATGACCTGAAAGTTATTGCTATACAGTACCTAGGTTACAAACAAGGAAATCCTTTGTTATTGCTGTAAAAGCATTTTTGATATTGTAAGTGTTACAGGTGTATTACTTTgatgaattaatgtataaatataaaagaatattaaataaaaatgtcttgaaacaacaacattaacaatcaTAACAAAAttctcaatattaaaatattaattcagaGTCGTATGCAtcttagaatatattttaattaatcaggcAATATCTTAAATGACCAGCAGAGGGTAAATGAAAACCCAGCAACTTTTGTGCAACACAGGCCATTAACATAGATACAGCTGAGCAGATCTGTTAACTACTCAATCTGTGTGGATTTAGCTCAGACATACTTATGGTCCTTTTTCAATTGAAAGGAATATAGTTTGACAAACTAGTAACAAATGAGAGAGgaaaattatcaaaatattcCTCACACATCAAGAAAATCCTCACACTGATTTGGGCAAGTTTATAGTTcagtaattataattaaagtgtaatctgtatatttttagtTTGGAAGTAGACAAAACAAATTTGGTAGAGTGAGTCTAGTAGTAAGTGTAGAGGCTGAATTTCTAAATGTCCAATCCTGACCTTATTTGATGGCTTTAACACAGTAGTAACTCTGATGGCTATAACTTTTAGAAGTTGCCCTTTTTCTCCTATGGTGAGGAACTTGAATAAGTTTATCAGGACAGGCCAAAATTATTCATGATAATCAGATCtgcttttaattgcatgttGCATCTGTGAAAGTGCGATAGAAAGATAAATACTATATAGATAGTGTGACACAGTGTGGGGTATCAAGCACTGACGTCCGGGGATCGGGGTTATAGATCACGGCAACGTTATGCGTGGGTCAAAAAGGGGGTAATTGGTGTCGTCAGCCAATCCAGATTGGGTTTCCAAAAATGGGTCTCAATCATGCGAAGGTAAGAATCTAGGTTATCAAATCATTGCCACactactctctctcacacacaaaaatgctCCAAACGCCCTCCTGGCTTTTCCCCTCAGGTACTCTGTGCCGTCTATAGAGCTGTGGGGTTGTTTTATAGGCTGCCGGTGATTGCCAGCAGCTGGCTGCTTCTTCTGCCCCGCAGGCTGTCAATGGTGCGTGTAGCtcctctgcctgtgtgtgttctTGCCCCGCAGGCTGCCAGCATGTGGTTCCGAGACAACCACGGGAGGGTGGCACGATCACTTATTAGTATGAAATGTCACCCAAGTAAATAGTATCTGAGCGAGTCCAGTGCCCATTTGATGGCCAAGCACTCTGTCTCTATTGTGGAGTATTTGGTTTCCCTGGGCAGAAGCTTGCGACTAAGATACACAATGGGGTGTTCCTCTCGCTGTATTTCCTGTGAGAGTACGGTTCCTAGTCCCTTTCTGGACGCGTTCGTCTGTACAAGCGGGGATCTTCGGAAGTCGTGGGTCACCAATCCCAGCCGATGGCAGAGGGCTTCTTTTAGGGCACGGAAGGCGGCTTCAGCTTGCTCTGTCCAGATCACCTTGGACGCTGCTTATTCTTGATCATCTCGGTGGCATGTTGGCATTGAAGCAGCGATAATAGCTTGTCAATCCCAGAAATGCTCTAACTTGTTTCTTGTTGATGGGTCAAGGCCAGGCATGAATTTTTCTTGTGGCTTGATCAGGCCTCTGCTTATGGTGAGGCCGAGTTATCTCCCACTTTTTCCAGGACCTGGCAGGGACCTCTCCAACTGGCCAGGAATCTGTTTTTCATAGTGGACACAAGAAACAGTACCTGATCGCCTGGCTGAAGTACCCGGGGCTGGGCACTGCGGTTGTAGGAGCgctgttgttcttgttgctCTTGCTGCATATGTGCCTGGACCATTGGCATCTCGTGTGCGTGCTCAATTAGGGTTCGGTGTGGGCATGGCTGTCCTTCCCAAGTTTCTTTAGCTATATCCAGTAGCCCCGCAGTCTTCGGCCATATAGCAACTCGAATGGGGAGAAACCAGTGGAGGCTTGGGGTACCTCTCGGATAGTGAAGAGTAAATAGGGCAGTAGCTGGTCCCAGTTTTTCCCATTGAGTTCCACAGTTTTCTTTAGCATGGCTTTCAGGGTATGATTAAATTTTTTTACGAGTTCATCAGTTTGTGGTTGATTGATGGAAGTGcacacttaatttatttatttatacatggaaTTTAAAGCGCCTTTGAAGAAACCCAAggacactgtaaataaaacaaggctGTGGGGTTGTTTTATAGGCTGCTGGTGATTGCCAGCAACTGGTCTAATATACTTCCCATCATGCACCACATCCCAGAAAGTGTCATAATAGttactattttatgtttttttcttttttcaagctCTGATCTGTGGAATCTGAATTGGCTCTCTAGAGACCACACAGTGATCTGAACCAGAAATGTGCTGTGAAAGCCAAAACATATTATAGGAATATGTTATTTTCTGGTTTGTCTTagacttaaaatataaataataaattgtatggGCATCATATGACAAGAATTAGAATTTATTTAACCActgtaacacaaaaataaaaggtcCTGCCACAGGGATTTGCAAGACCACTGAGCAATGGTCTTCTCATGATCCAGGAATTTGGatctgggtgggggggggggataatttTGATAACTTGGACAAATTTAGGATTGTaacaatacaattgtattttttttttttttttttaaacattaaagcaCTTAAATTATGCCAGTTGACATATGACATCACTGCACATCATCTCAGGCTGCTGAGATCTGAGCAACTGCATGCCGTACAGGATACATGGCGAGTAGTTTTTAGCGTTACTTTGGATGTCTGAGTCAGGCTTATTGGtgacttaaaataataatgcccTCAAAAgataattttacatattttcatacCCACGTGAAGACTTAATTCCCACTTAATACACTCAAACATAAGtgatatatacagctctggaaaaatgtgagaccactccaagttcagaaatcaatgttaagtggtctcttaattttttccagagctgtatatatatagttttatcaGAAAAGAATCACCTTTATGCCTTAACATACATGCATggcctttttcttcttctttcttttttattattttatgtacataGCATATTGAAACATTGTTGTACAATCCTCTGCACTGTGACGGTCAGTGCTACAAATCCTcagacattacaaaatatagtaAATGTA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047290 (alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 644731 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 749705 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 956104 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 978895 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 119522 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 399926 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 591534 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1340893 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1345889 8798964 ~ 8799167 (-) True G60725
AMCG00020034 mRNA downstream 987 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020035 mRNA downstream 59719 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020027 mRNA downstream 318858 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020026 mRNA downstream 437425 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020025 mRNA downstream 522008 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020039 mRNA upstream 54286 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020038 mRNA upstream 84857 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020043 mRNA upstream 313850 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020051 mRNA upstream 339223 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020050 mRNA upstream 346847 7799922 ~ 7810406 (-) True AMCG00020050
TU75494 other downstream 974047 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 978895 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 978895 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 991883 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 2152808 5291590 ~ 5292673 (-) False AMCG00019992
TU75977 other upstream 1361184 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1386136 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3302393 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4242616 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 5031294 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile