RNA id: AMCG00020034


Basic Information

Item Value
RNA id AMCG00020034
length 4729
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00020034
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7429012 ~ 7444494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cTGGTAAAGACTCGCAGCTCTAATTGCTGCCAAGGGTGATTCTACTAAGTATGGACTCAAAGGGGTGAATATTTCTCTAACAAGACATCTCAAAGCATGACCAATTTAATTTGTGGGTAGCAAATCTAATGTATTTATAGtacatattattgttattactcaATATTATTTAGTAGCATAAACTATTACACCTGGGgaatatttcatttgaaaggaGATGGCATTTATCCAGACGCCCAGTGCTTAAAGATGGAATGGCATTTTGCCTTTCTTAGATTTGGAGAAAGGAAGGTAAAACTGCGGCTTTTTAGACACATAGCAGCAATCAAACATCCGATCCTGTGTTGACAGCACTTGATAAAGGACGGCGTTGTGGccacagtatttatttgaatgtgagaTGGTCAGATTTCTACTGCATTGAGTTCTTGTCGGCTCGCTTTAGGACTGCGCGGACACGCAGGTCCCTTATTACAGGGGCGATGTGGAGAGAATCGATATCGCATCTCTGCGCTCCCTGAAATGCATGAATGGATCAGAACCAGCCAGAGCTACAAACTGGATGAAGACTGAACTGGGGAGAATGTGATTGTAGTTCTAGCCCTACAGGAAGTATGGCGCACAGGCTCGTGGATAAGTTGTCTGGTTTTGACTCCCCACAGCAGCGGCAGCAGAGTCAGAAGATGGTCATTTTTGGGACCATTTTCCTCCTCACCACGCTGCTCATCCTCTACAGCTCGAACAGTGGAAATGAAAGTTACAATCCCCGCAATGGCTACCGCTACACTGTGCACACCACCAACTTGAAGGCATGGGCAAACCAGGATGGCTATGTTGCAGTCTATGGCAACAAGACCATGAACCTGCACTGTAAGCAGTGCGCCTTGGTGACCAGCTCCAGCCACATCCTGGGCAGCAACGTGGGTGACGACATCGACCAGGCGGAGTGCGTGATTCGCATGAACGATGCTCCCACCACGGGCTTCGAGAAGGACGTGGGCAACCGCAGCACCATCCGGGTGGTGGCCCACTCCAGCGTGTACCGCATCATCCGGCGGCCCAGCGAGTTCCTCAACAAGACCCCCGACCCCGTGCTCATCTTCTGGGGGCCGCCCACCAAGATCAGCAAGGATGCCAAGGGCACGCTGTTCCGGCTCATTCAGAAGGTCAGCATGGCATTCACCAACCTCTCCACCTTCATCATCGCGCCCAAGAAGATGCGCCAGTTCGATGACCTCTTCCACAAAGAGACGGGTCGGGACAGGGAAAAGTCTCGGTCCTGGTTAAGTACTGGCTGGTTTACCATGGTGATCGCCATCGAGATGTGTGACAGTATTCACGTCTATGGGATGGTGCCCCCATACTACTGCAGCCGGAGACCTCAGCCAAAAAGGATACCCTACCACTACTACGAGCCCCGGGGACCCGATGAATGTACAACCTATATCCAGAacgagagagggaggagaggtaACCACCACCGCTTCATCACAGAGAAGCAGGTGTTTGCACGCTGGGCCAAGCATTACAACATCACCTTCTCCAACCCAAAGTGGTGACGACAAGCACAGACCGTGGACTGCGGGGGAGATGAGAGCCAGCGATAGGGGGACTGTCATCTCCCTCTGATCTGTACAGCACCATCCAAGGTTTCACTTGACCTTCTGCTTAGGTCTGCTTCAAACTTACAAGTGTTTTTTGTACACATGCTCAGTGCTCTTCTCTCTGTAGGTATCGTGGATGGGTAGTAGCCTACGCTGTGACCGTTAGTTGAGAATTCTTTCCTTCAGAATGTTGCAAGTTGGGGTGGAATCTCAGTGAATATGAAAAGCATCTTTattttcaagtaaaaaaaaaacatatatatataaatatataaatgtctaCTTTCTGCAAGTTTTTGGCCATTTTTCTGATGGAGGAATCATTTTCTACACAAACCTACTATGAACATCTGTCAGCCGTTAATGTAAATAAGAGTTACTGAGGATTGTTGCTTTcttaaaagatgtatttttagATGTTTATAATTCTTTGTAGAAACTACCACAGgaaatatacattattctaccaacacatacatacatttatgtagAGAATACACAGGAATTGAAATCTAAGAGAATACTTTTCTATTTTCctacaaattatataaactaAAATGTGCAGGACAATAGAGTTCATTTTCACTCTCCGAGAGGATTGCACCAGTTTTTCTCTGGACTAACACTTTCCAAAAGGCTTATTTCTCTGTAGGAGAAAGGCTGAAAAACAAGCTGAAGAACATGTTTTGAGTTCTACCACCCAGCTGCTTCtgatggaaaatggaaaataatttaacagcTAACTAAGTACAAGGGAATGGGCACATACATACGAAAATTCTAAAACCAAAGAGAAGCCCATTTAAAGGCCACTGGAACGACAGACTGTTCTTGTTCTTTCCCAGGCTCCAGGGGAAGGCCATTCGAATACCTTCTCTTCAGCATGTGTGGGGGTGGGATAACAGCAACATTAATTTTCCATGGTAACCCAGTCTTCTGAATCCATGGTGATTTAAACTTCAAACTAAACTCTTGGCACTATCAGTTTAAGAAATTCTTAGAACATGATTCGGAGAGAAGCACAAATCTGGTTCTTTCAGTTTATTCAGAAAGCAGCACTCACAAGCAACAGCTGGGTAGGGCAGGCATCTAGAGGTGTGCCCAGTCTCTTACATATAGTcaattttgattaaatacaatggGGAGAATAGATATGTTTTCAGCTTTCCATTCCATCAATGGCTTAATTAATCAGGATAACCATGATCTTTAACCACTGATTGAGTTATACACACTGAAgctacacacacaagcacacatttaAGTTATGCTATGCAATTGGCACCTGAATATGAAGAGGGGGAGTGATTTGATTATCAtacctgtgttttgtttttttgtgtttgtattctttaaaatgcatttttgtgttgttttaaattacactcaTTTGGTTTTGATAGCTTAGAACATTTGTGTTTCGATGAACGTGAATACAGaaccttaaaatatattgcattagaCTAGATATGACTTTAGTGGTtcttattttttgggggttgtttTTCTTACTAAAAAGACAGTGTCTCCAGTATTCACCTCAGACCAACtgactgtttatttgtttaagtgCAGGTGATAATGCGAGATAAAATAATCCAGTCACGAACACCCCTTAAACAAACGAAGACTGTTAATTTGCCTACAGAGGATGTAGCAACTTCACACTGCCAGACCAGTATCTCCTTCTCATAGAAGAAAATGGGGAAAAACTTTAATCAGTTGCTACAAGGGTGTGGAGACCGAAGTAGACGGAGAaatgctaaacaaaacaaacctgacTTCCCTTGTTTGAATGCTGGGTATTGTGTTTGTTCTAGAACTTGCATTCCAAAATAAAAGAACACTGCTGCCCACTAACGGAAGTACAAATCCCCTGTTTgtgtagtcttttttttttttaatgaaggatCTCATCTGAAATGAatccgaaaaaaaaaaacagtatgtgCAGTCCTCTACCATCTGTGTTGATGATTGGTAACTCAAAGCAACACAGACTTCTCTACGAATTTCCCTGCGCAACACAATAACGTAAGTATTTTTTAGCAGGTTTTTAGGCCACAAACCCATGCACTTGAGAAGGGTTGCGGTCAAGACCGGGTATTTCGCAGAGCATTCCTGGCCCTGTAAGGTCAccctaaaatattatttatacaagCATGATATGACTACAAAGCTGTACTATGTGACCCCATCAGTAAGGTGGAATGTCATTTTTGCCTCCAGATTTTATATTCCAgtgtattacatatatttaaaatagcttgctgttattttgaattgatgtttgacaagtttgtgtgtgtaaaaacatTTGAGCATTTTATGGAATACactcaatgtaaaataaagatgcTTTTTCAGTATCTGTCTGCACAGAGGAGCTGGATGTTTTAGGATCTGCCATCAGTGTTGGGATTtttcttgaaaacaaattaacaatagaATGTTTTGTAATCTTAACATTTTTTGTACCTATGGTATTTGTGATGCCATTTCTTTTCACTCTTTTTGAATGTCTTATACTGATCTTTGATGATGGAAAGAATACCCAAGGCTGTGTAAGATATTTGTTCACAATGTGTGTAGgcctaaatgtttttaaagtcttGTAGATTCAATCGATTTTGTCTACCACCCATTTCCTCTATGGTTACAATAAAGACGCACACTTGTTTGAAGGCGCTTTCTTTTTTGGAATCTCTTTCAATCGTTTGAATACATATGATATTTGGATTCTACACAAAGTACTGATGTTTGTAActttttaaacagaacaatCATGCTTGTGTTACTGCTGTGCTGGCTAAGGGAGCAACGCCATTGAATTGATGCTTCACTTTGATTAATTAATGACTGATGTGTccaagaaaagacaaaaacctGAATTATTCCTAAAACACCTGCAACTACATACAAGAATACAGCAGGATCCAAgatattccttatttatttttgtaaggttgggggaaaaaaaaaatcacacaagaTGTTTCATGTGGGATTGTTAAAGGAATCCTATGGGATATTTGAGGAATGTTTCAGGGTTTTGTCTCaatttgttttcccatttttgTGTGGTTGAACACTTTCTGATTAAGTGTGTTTAGAATATATGAAGC

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03376 SIAT7F, ST6GalNAc VI; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 628262 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 733236 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 939635 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 962426 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 128103 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 408507 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 600115 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1349474 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1354470 8798964 ~ 8799167 (-) True G60725
AMCG00020035 mRNA downstream 43250 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020027 mRNA downstream 302389 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020026 mRNA downstream 420956 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020025 mRNA downstream 505539 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020024 mRNA downstream 532023 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020033 mRNA upstream 987 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020039 mRNA upstream 62867 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020038 mRNA upstream 93438 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020043 mRNA upstream 322431 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020051 mRNA upstream 347804 7792298 ~ 7797939 (-) True AMCG00020051
TU75494 other downstream 957578 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 962426 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 962426 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 975414 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 2136339 5291590 ~ 5292673 (-) False AMCG00019992
TU75977 other upstream 1369765 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1394717 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3310974 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4251197 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 5039875 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile