RNA id: AMCG00020035


Basic Information

Item Value
RNA id AMCG00020035
length 5462
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00020035
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7364054 ~ 7385762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcttctcaggGATCTTCTGCACAGAAACTCTAGACAAATGCTCATCTTTTCCTTGTCTGAACAATGGTACTTGTGTGGACATGATTGATGACTATTTTTGCCACTGTGCCAATGAACCAATCAAGTATATGGGGAAAAACTGTGAGGAGCTGTATGACGCATGTTCGCTGCAGGTCTGCCCAGCGTACAGTAACTGTACCAGCACACCTGGCAGTGCAGAGTATATCTGTAGCTGTCCAGTTGGCTTCACAGGCCCAAACTGCACAACTAACACCAATGAATGTGAAAGCAACCCCTGCACTGGATATGAAACGAAGTGCGTTGATGGTGTAAATGGATATACTTGCCACTGTCCTAACGGCTATACAGGGAGCGACTGCCTGGCCCGAATTACCAACTGCTCAGACGTACCCTGCCATCATAATGGAACCTGCATCGATTTGGACGGCAGATACCTGTGTCAGTGTCTCCCGGGTTTTCGGGGGGACTACTGCGAAGAAAACATCAACGAATGTGAGCCCATGCCCTGTAAAAACGGGGCGATCTGCCTGGATGGTATGAACGAGTACCACTGCTTCTGTGTGCCGGGATTTCAGGGCAACAACTGTGAGATCGACATTAATGAGTGTGCCTCCAGGCCGTGCGAGAACAACGGCACCTGCATCAACGAGAAAGACCGATACGTGTGCGAGTGCCGGCTGGGATACACAGGAGTGAATTGTGAAGTGGAAATCAATGAGTGCGAGTCTAGCCCGTGCCAGCATGGGGCCACCTGTCAAGACTATGTGGGGCGATACACCTGTATGTGCCTTGCGGGCTACGAGGGACTGGACTGTGAAGTAGACATCAATGAATGTGCCAGTGAACCTTGCCACAATGGAGGTGTCTGCCATGATCTGGTGAACGGGTATGGCTGCTCCTGCGCTGATACAGGGTTTGAAGGGGATAACTGTGAGATTGATATTCCCGAGTGTGCATCCAATCCCTGCCAAAATGATGGCACCTGTATCGACGGCGTTAAACTCTACAGCTGCCTCTGCTGGAGTGGTTATGAGGGGCAGTACTGTGAAGTAGACATCAACGAATGTGCAGCAGAGCCATGTGAAAACCATGGCATGTGCTACGAGCGGTCCCAACACGCCTACTACAGCACACTGCCCGACTTCCCACGGGAGTTCAGCTACTCGGTGGCGGCAGGCTACGTCTGTCACTGTCTGCCTGGGTTTACAGGAGCTGGATGTGAGACCAACATCGATGAATGTGAGGGTAACCCCTGTCAAAACGGTGGCACGTGTGAGGATGGCATTGCAGAACACAAATGCCACTGCCCACTGGCAGAAAAAGACGCCATCCCTTGGGGTGGTCGAGACTGTGAAATACAGTTGGTGGGCTGCACAGGAAACGAATGTCAAAATGGAGCCACGTGCACGCCAACACTGGTAGAAGGATACCATGACTACACTTGTCAGTGTCCACCAGGCTTCTATGGCCAATACTGCAACATCACAACAACTTTCTCGTTTAACTCTGTTGGCTTTATCCTTATCAACGCTTCAGAGAGCAATAGAAGCAAGAGGGATGTTGGCTCTGAGGGACTTAGCATCAGCCTGCGCTTCCGAACCACCCTACCTgatatgattatattttacagGGGTAATGAACTCGATTTTCTGTTCTTGGAACTTATCTCGGGTCAAATCCATGTTAAATCACGTGTGGAAACAGTTACATTACACGCACAACTCTCTCATCAGGTAAACGATGGAAAATGGCATGAGGTGACTGTGCGTTTAAGGACGGATTTGGTGGTGACCCTTAAAGACCCTAACTGTGGCAGTGACATATGCACAGCAAAGGACATTGGCCCAGAACAACAATCTTTTAAAACACCTAGATCTTTCAAGAAAACCTTTGTTGGCGGTGTGGGCTCTGAACTCTACCTGAACAACACAGGAAGCAAGAGTGGTTTTATTGGTTGCATGGAGGACCTTCTAATCGATTCCTTGCTGGTCTTGCCCCAAGATATTTCTAAGGGCCTGGCTACAGACATGGAGCTGGGCTGCAACAAAACCGAACTGTGTGCCCCCAACCTCTGTCTTAATAACGGAACCTGCGTTGATCTATGGTCCACTTTTCAATGCCACTGTTCCCGCCCATTCCATGGTGAACGCTGCTTGGATGAATACACACCACTGACTTTCAGTCGAGAAGATTCATCGAGTTATGCCTCCTTCAATGTAAGCCACAGCTACGGATCCACTTTTAACGTCTCATTTTTCTGGCGTTCGCGAAAAGAGAGTGGCTTAATGTTCCAGCTCAGGAATGACCAGAGTGCATACTTCACCGTGTATCTAGACATGGGCAGGATATACTTGCAGACACTTTCCACCTTGGCATTATCAGTAAACCCCCTGTACAGCACTACTGGTGGAAAGCAATGGCTCAtggttacatttaattatggcAACATTAGCTTCAGCACTTCCCATGATAATATACAGATGCAAGTGGTCCCTAATGTTCAAGTTCAGGCAGGGGATTTGGCCTTTGTAGGAGGTCTCCTCTGGGAAAATGAAACACAGCCTTGGGGAGGCTATTTCAAGGGATGCCTACAGGATGTGCGACTCAACAACACGCGTTTGGCATTTGAGAACGCCAGCTCCAGCAGCTCGGAGGTATACAGCATCCTGCAGGACAAGGATGTGACAGTGGGCTGCGTCAGTGACGACACCTGTCAGGCGACACCGTGTGAAAATGGAGGCACCTGCAATGTTACTTGGAACGACTATGTTTGCTCCTGTCCTGAGAATTTCACGGGCAGAAACTGTGAAAGAAGAGTATGGTGTAGCAGCAAACCCTGCCCCCCCAACAGCCAGTGTCTCAATCTGCCTGATGGATACGAATGTGTGACCACTGCAACTTTTAAAGGGGAATCCCCTATTAAGTACACTGCCAACATGACCCTCAGCCGGCCAATTACTAGCATCTCTCTGGATGTTCGTACCCGAGATGAAGACGCTGTGCTTCTTCGTGCCACCAATGGAGTCGAGTTGTTCTGTGTTGGCTTGCATAACTCAACACTGGTTGTAAAACTTCGGACTGGGAATAACTTCGAAATCCTCTCGTTGTTCAGTGAGTTTCCTATTTCAGATGGCCTGTGGCACAAAGTTCTGGTGTCAATGGCAGAACCCTATCTCGGGTCTTCAAAGTGGATGATTGTGGTGGATGATGAAAAGAACACGAGCAGTTTGGATGTGGCAGGAAACCTCAATTTCTTGAATGAGTCTGTGGTGTCACTGGCTGAAAATTTTACCGGTTGCCTGGGAAGGGTGAGGGTGGGCGGTGTCCATCTTCCCTTCATTGACAATGACATGGCTCCTCAGCAGGCGAGGTTTATCAAGCACAACGGGGAGGAAATCCAGACGGGATGCATGGGGTCCCCCGTCTGCTCTTCCCAGCCATGCCTCAACAATGGTGTTTGTGAAGATTTGTTTAACTTCTTCGAGTGCCGATGCTCACTCGGTTGGGAAGGCCAGTATTGCCAGTATGATATTGATGACTGCCAGTCAAGTCCTTGCCTCTACGGCAACTGTAGCAATTTCCCAGGAACCTACGAATGCGAGTGCTATCCAGGGTACACTGGAAGAACCTGCGCTGTGGATATTGACGACTGCCTTGATCACCACTGTGCAAATGGAGGGACTTGCAATGATGGAGTAGACAGCTACACCTGCACCTGCTCTCCTGACTACACCGGTCATCTTTGCGAGTGGTCATATCCGCCACTGGCGTGTGAGAAAGATGTGCTGTGTCAAAATCATGGCATTTGTAACGATGGACTTTGGGGGGCGAACTGTACGTGCACTCCTGGCTTCACAGGGCAAAGGTGTGAAATAGACATCGACGAATGTGCAGCAAATCCTTGCCAAAATGGTGGCACCTGCAAGAACTATGTTAACAAGTTTGACTGCACATGTTTACCCAACTTTGTAGGACAACAATGTGAGACAAATAAACAGGAGCAGAAGGAGCGGATCCCCCTCCTTGTGATCGCCATCCCTGTGGCCTGCGGCTGTGTGCTCCTGGTGATCATCGGCCTGATATTCATGGTGCTCACGGCCCGTAAGAAGCGCCAGTCGGAGGGAACCTACAGCCCGAGCCAGCAGGAGGTGGCCGGAGCCCGCCTGGAAATGGACAGTGTCCTCAAAGTGCCTCCAGAAGAGCGGCTCATTTGATTGGCAGCCGCCCCGCAGGCTGGACGCTTCTCTGGGCAGCTTTGCTTCGCTGCCAGCCCCGACAGACATGATCTTGGTGAAGGTTTTTGAAAGCACTGGGAGCAGTTGACCTCCTGCCAGGTGCACACTGTTGACTTCTGTATGTCTTATACACTGAATTGATTCCACTAAAGTGGGGAAACATTCCCTCTTTACTTGTACTATAGTGTAATTATTCGCCGACCAAAAGGTAAATCCTTAAGGTGGATTAGGAGCACGCCGCTGGTATTGTAGCTGGTTTGTTAGCTGGTTTGACAGGCACCTGTTGCATCTGTTCTAAGGCCTACGACTGCAACCTTGATTGAAGACGTCGGCAGCACAGGGAGAACTATAACTGCCAGCTATGTAATACTGTCAGtcttacaaaatgaaatgattcCACAAAAATGGATTACACTGTGTTCAGGACAAAGCCTTCTGCATACACAGAAATAATCCTCAGCCCACGGCTGTAGATAAGTTTATACTAGTTCCCTTATTCCGACATCTCaactttcagattttttttttttttgcaagagtTACCTGTCAAAGACACGACGCACTactacaatatatgtattttctttgttttgtgatCTGTGATACctaaattattttctgaatgtcATAACTGTGCTTACATTGTGTTAATGACTGTTTTCTTATGTGTGTTAAGAagataaagagaaaaacaatgcGTCTAAAATGTAGTTGTAAGAATAAGGTGTAAGTGACTAACATCTCCTTTTTGGATGAAGAACAAAATGCACTGGAAAAAGGCAGTGTTGTTTTTGATGACTACTTTTGAAATTCAAGCCACTACTGTATTTAAGAGCTGATTTTATGTCTTTATAAAAATGGTGCTGAAATTCTCCAAAGAAACACATCGGAGCAAAACATTGCCTTCAAAAAGCAGCTTCTGTCCACAGCCAACATAGAAGCAAACATGGGTCAATGTTTGGAGAAGAACTTTCAAGGAACTGCATATCATAGTACATACAGTACATGGAGAGTTACATACGTGTGGCACTGATTTTGGTTTTGATAAGGGGAAAGCAATTAGCATGTAGCATGTGTATGTTGAGAActggacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaccgcTTTCCTCATCTCAAAACATTGCTATTTCATTGTATGTATGCTGGTGAGGAATATTTGATGTAAACTGC

Function

GO: NA

KEGG:

id description
K16681 CRB; protein crumbs

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 563304 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 668278 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 874677 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 897468 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 186835 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 467239 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 658847 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1408206 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1413202 8798964 ~ 8799167 (-) True G60725
AMCG00020027 mRNA downstream 237431 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020026 mRNA downstream 355998 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020025 mRNA downstream 440581 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020024 mRNA downstream 467065 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020018 mRNA downstream 772951 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020034 mRNA upstream 43250 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020033 mRNA upstream 59719 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020039 mRNA upstream 121599 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020038 mRNA upstream 152170 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020043 mRNA upstream 381163 7766925 ~ 7785992 (-) True AMCG00020043
TU75494 other downstream 892620 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 897468 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 897468 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 910456 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 2071381 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 55041 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 1428497 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1453449 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3369706 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4309929 11695691 ~ 11701645 (-) True G61269

Expression Profile