RNA id: AMCG00020038


Basic Information

Item Value
RNA id AMCG00020038
length 1131
RNA type mRNA
GC content 0.58
exon number 5
gene id AMCG00020038
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7537932 ~ 7569605 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCCGACAGCTCCTATTGCTTCTGCAATGCGTCGCTTTGACTCTGGGCCAGTACGACATCTGTAAGTCGCTTGTGAGTACAGACGACGGCCAGATATGGGAGTCCTCCGCCTGCCAGCCCAAACACACGTCCATGAAGCAGTACGTGAAAGTCAGGGTGGACCCCCCGGGGATCACCTGTGGAGACCCGCCGGAGAGGTTCTGCACGCTGGAGAACCCTTACCTGTGCAGTGACGAGTGCGATGCCTCCAACCCCGACCTGGCCCATCCGCCCAAGCTCATGCTGGACAACGAGAGAAACGGGCTGATCACCTACTGGCAGACAGTGACGTGGAGACGCTTCCCTGACCCCCTGCTGGCCAACATCACACTGTCCTGGAACAAGAGCCTGGAGCTCACCGACGACATCCTCATCACCTTCGAGTACGGCCGGCCCACCATGATGGTGCTGGACAAGTCCATCAACAATGGGAAGACGTGGGAACCCTACCAGTTCTATGCGGATGACTGCATGGACGCCTTTGGCATGCCCCCAAAGAAAGTGCAGGACCTGCTGGCCATCAACGTGACTCGTGTGATCTGCACCGAGGAGTACTCGCGCTGGGTGGGCTCCAAGAACGAGAAGAATGTGCGCTTTGAGGTGCGTGACCGATTCGCCCTCTTTGCCGGGCCCAGGCTGCAGAACATGGACAACCTGTATACGCGCCTGGAGAGCATGAAGGGCCTGAGGGATTACTTCACCATCACCAACCTCCGGCTCCGGCTCCTGCGCCCCGCCCTGGGCGGCACCTACGTCCAGCGTGAGAACCTCTATAAGTACTTCTACGCCATCTCCAACATCGAAGTCATCGCCAGTTTGGACTCTGCCAACATCTTTGGAATTAATAACAGATTTATCCTCGGCCTGGTCAAGGACAGTATGTGTAAATGCAATCTGCACGCCAGCCAGTGTAACTTTCGCGAAGGCCGACTGGAGTGCGAGTGCGAGCACAACACCACGGGCCAGGACTGCGGCCACTGTAAGAAGAGCTTCCGTGCGAAGTCCTGGAGGCCCGGTTCCTACCTGCCCACCCCGAATGGATCACCAAACACCTGTGAAGCTGCTGGTTCTACCCTTGGCAGTAAGTGA

Function

GO: NA

KEGG:

id description
K16359 NTNG2; netrin-G2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75537 lncRNA downstream 737182 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 842156 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1048555 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 1071346 6463548 ~ 6466586 (-) False G60348
TU75725 lncRNA upstream 2992 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 283396 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 475004 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1224363 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1229359 8798964 ~ 8799167 (-) True G60725
AMCG00020039 mRNA downstream 22241 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020033 mRNA downstream 84857 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020034 mRNA downstream 93438 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020035 mRNA downstream 152170 7364054 ~ 7385762 (-) True AMCG00020035
AMCG00020027 mRNA downstream 411309 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020043 mRNA upstream 197320 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020051 mRNA upstream 222693 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020050 mRNA upstream 230317 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020054 mRNA upstream 312215 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020055 mRNA upstream 484214 8053819 ~ 8071930 (-) True AMCG00020055
TU75494 other downstream 1066498 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1071346 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1071346 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1084334 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 2245259 5291590 ~ 5292673 (-) False AMCG00019992
TU75977 other upstream 1244654 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1269606 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3185863 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4126086 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4914764 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile