RNA id: AMCG00020050


Basic Information

Item Value
RNA id AMCG00020050
length 7843
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00020050
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7799922 ~ 7810406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGTAAACCATGATTCCCATCACTGAGCTCCGCTACTTTGCCGACACCCAGCCGGCCTACCGAATCCTTAAGCCATGGTGGGACGTCTTTACCGACTACATCTCCATCGTCATGCTGATGATCGCCGTCTTTGGGGGGACGCTGCAGGTGACTCAGGACAAGATGATCTGCCTGCCGTGTAAGTGGGTGGTCAATAAGACCTGTGACCCCTTATTGCACCAGAAGTACTCCAACGCCACCCTCCCTCCAGTCCCTCACATCATTGAGCCCAAAGGGATCCAGTACGACCTGGACCGTCATCAGTACAACTATGTGGATGCGGTGTGTTACGAGAACAAACTGCACTGGTTTGCAAAGTACTTCCCTTATTTGGTCCTACTTCACACACTCATCTTTCTGGCTTGTAGCAACTTCTGGTTCAAGTTCCCCAGGACTAGCTCCAAGTTGGAGCATTTTGTGTCCATCTTGCTGAAGTGCTTTGACTCTCCTTGGACGACACGTGCCCTCTCTGAGACTGTGGTGGAGGAGAGCGACCCCAAACCCGCCCTGGGGAAAATGAACGGTTCCATGGACAAGAAGGCTTCCTTTGTCAGTGAAGATGTGGAAGCCAGCGTGCCAATGCTCCAGAGGACTAAATCCCGCCTTGAGCAAGGGATCGTGGACCGCTCGGATACTGGAGTCCTGGACAAGAAGGAGGGCGAACAAGCCAAAGCACTGTTTGAGAAGGTGAAGAAGTTCCGTACGCACGTGGAGGAGGGAGATATTGTTTATCGACTATACATTAGGCAAACTATTATTAAAGTCATCAAGTTTATTCTCATAATTTGCTATACTGGTTACTATGTGAACAATATCCAATTTGATGTGGACTGCAGTGTTGACATCGAGAACCTCACGGGTTACCGTTTGTATCGCTGTGCCCATCCTTTGGCCACCCTCTTTAAAATCCTTGCATCCTTCTACATCAGTCTTGTAGTTGTCTATGGCTTAATTTGTATGTACACCCTTTGCTGGATGTTGCGTCGTTCCTTGAAGAAATATTCGTTTGAATCAATCAGAGAGGAGAGCAGCTACAGCGACATTCCTGATGTTAAAAATGACTTTGCTTTTATGCTGCACATGATTGACCAGTATGACCCCCTATACTCCAAGCGTTTTGCCGTCTTCCTCTCTGAGGTGAGCGAAAACAAGCTGCGCCAGCTAAACCTCAACAATGAATGGACATTAGACAAGCTGCGTCAGAGGATTACCAAGAACTCCCAAGAAAAACTGGAGCTTCATCTCTTCATGCTCAGTGGAATTCCCGACACAGTCTTTGACCTCCTTGAGCTGGAAGTCCTCAAGTTGGAGCTGATCCCGGATGTCACCATTCCTCCCATTATCGCCCAGCTCACAAACCTAAAAGAGATGTGGCTTTATCATACGCCAGCTAAAATTGAGGCCCCTGCTTTGGCCTTCCTGAGGGAAAACCTGAAGTCCTTGCATATCAAGTTTACAGACATCAAAGAGATACCACTTTGGATCTACAGCCTGAAGAACCTGAGCGAGCTGCACCTGACCGGAAACTTGAGCGCAGAGAACAATCGCTACATTGTCATTGATGGCCTGAGGGAACTAAAGAGGCTCAAGGTCTTGAGGCTGAAGAGCAACCTGACCAAGCTTCCTCAAGTGGTGACTGATGTTGGGGTCCACCTTCAAAAGCTGTCCATCAATAACGAGGGCACCAAGCTCATGGTGCTCAACAGCCTGAAGAAGATGGTCAACCTGACCGAGCTGGAGTTAATCCGCTGTGATCTGGAACGCATTCCCCATTCCATCTTCAGTCTTCACAACCTCCAGGAGATCGACCTGAAGGACAACAACCTGAAGACCATTGAGGAGATCATCAGTTTCCAGCATCTCCACCGTCTTGTTTGCCTTAAACTGTGGTACAACCAAATTGCCTACATCCCCATCCAGATTGGCACCCTCACCAACTTGGAGCGGCTTTACCTGAACCGGAACAAGATTGAGAAGATTCCCAGCCAACTGTTTTTCTGTCGCAAGCTGCGGTTTCTGGACCTGAGTCACAACAACCTTACCTACATACCAGCAGACATTGGCTTCTTGCAGAACCTGCAGTATTTTGCAGTCACAGCCAACAGGATTGAGACTCTCCCACCGGAGCTCTTCCAGTGCAAGAAGCTGCGAACCCTCAACCTGGGGAACAACTGTCTGCAGTCCCTGCCCTCACGCTTCGGGGAGCTCACCAGTCTGACCCAACTGGAGCTGCGTGGGAACCGGCTGGAGTGCCTGCCGGTGGAGCTGGGGGAGTGCCGGCTGCTGAAACGCAGTGGGGTGATCGTGGAGGAGGACCTCTTCAACACGCTGCCCTCCGAGGtcaaggagcagctctggagggcTGACAAGGAACAGGCCTGAGCCCCACCACCGGACATACGTGGAGAACACAGGGACCGGGCCAGCCTGGTGTCAAGAGCACGGGGAGCCGCCGTGAAAAAGCATGGCGGCTTTCAGACGAGCACAAGGTGCTGAAAGAGGCATTACAACTGAAAACCTGGCCctgcagattttaatttaatgtacttttttcttttctttttctcttcttacATGGAAGTAGTAATCCTTGAATACTTTTAAGCACACCGGACTCGGAGGCATGACAGGAAGTCTACTTTGGATAAAAAGGGACTTTTGGAAATATTTCCGTGAGGGAAGGACTGTGAAAGATGAGTTTGTGATACTGAATAAAACAACTCCTTTCTGCCTGGGATTTCAGTCACCCTACCCTGCGTGTCAATCAGCAGTTCACGCATTCACACTAAATGCACGCCCCTTGCTCATCCTTTCCTTGAACAGAGGGCTTGGCGATACACAGGTGTCTGCTTTCACCTGCAGCAGATTTTGAGGAGAAAGGATAATTACTAATGTTATTTTGAGGGAGGAGATTGATTTTTAGTGGTACAAGTATACCCAAGGGGGGAACATGCTTTTTTTTGATGTGCTGGTGTGTGGACACTGTCCCCGGGGGCATTCACGTTTAATAAGCAGCGGCAGGACAATCCTGTATATAATCACACGACGCTCTGTCTCGTGGGCAGGGTGGGAGGCAGACGTACGGCAGCGTCAAAACCACATTCGATCTACAGAACACTAATATTCCACCATCTCCACGACACCCACGAGCATCAGCAGGAGGGATGGGGCAGCGATCTCGCAGCTGTGTGGAGGAGTTGGAGCGACGGGAGGAGTGGAACTGGCGAACATGGATGGGGGAAGTTTATTTCCGTTAGATCATTCCTCTTCCTGCCTTCTTAGGCAAGGAATGTATGTACCCAGGGTAGTTGGAATTATCATATTTCCACTATATACACGTATGTACAGTAAGTGGGATTCCTGCCCTTCATAGTTCGAGTCTATTGCATTTCAGGTTTCCGGATGCCTCACCACCTTGCTTCTGTCTGAGTTATTTTGTAGTAAGTGATCCAAAATGTATCTGGGTAAGCTACAATACAATGTGCTCCTACCCTACTTCCTGACTTCACTCTTGTGGTGTATACAGGACTTAACCAGCATGCATAATTAAACCACCTAccctgtgtatatatatttaggctTAAACAACAACTGTTGGTAACGAAGGAGAATATGGTATGTGCCATTTACACCATAAGCTAGATAATGTAGAGAAGCTGTCACTTGTGCAAGACGTACAAAGTCTTCTTTGGATCTCTAGTGATACATATAATGTCGTTTTGCCCAGGACTTCATCTGTAGCGATCTTCTAAATATGgacacactaaaaaaaaaaaaaaaaaaactcctccTTAAGGAATTTgggtatataaatgtaatgtgtaaaagATACAGGGTgcacacagattaaaacaaatatgtaaaggATGTGCAATATATTCTGTTTCATCATTGACTGAGTCATGTTTCTCACTTAGCTGCTTTCACTGatcagtatatttaaaaagtgtggtGGTTTTGAAGATCAGCGGACATCTCCAGTAACTAAGATTTGCCTTAACAGAAGCGCTCTGTAAATGAAGTGTGTTTGGGGAGAAAATCATTTGAATGCGTTTTTCTTTGTGGttggtgcttttattttattttaaaggtttttatttttttctatcaaTACCCTGTCATACCAGCACTCCGCTGTAAGGTGAAGGAAAAAATCATGGAAGTGATGCTTTCTTCATTCTTGGTGAAAGACTTTAGTTAAAATGatacaggtttaaaaaaaataccatgcCCTTAAACCAATCAAAACTGTTTATGTGGTGTACAAACAGTAATTAAACACTATATGTAGGTAAACCTCtctgttttcttcctttttcttcctaATATTACAAATCTTCATCAGGTTGCATTCTACTTCCAACAAACCTTTGAGTGGTCAGAAGTTCCCAGCTAAGGCTTCGAACAGTTTTACGTGCACTAAGAACAAACAAAGACCCTCCTTTGTGGGCAAAGAACAGAAGCTGTTCATTGAGCAAAAGAACAAACTACAGAATGTTCCCTTCAAACAGTGTGTGgaggttgaaatatgtttgaatgaatatttaaatttagatttctttttaatacatagCTGAAGGGAACATGTTCTATGACCTTCTCCCTTGGTTGTCTAGACCAGATTCAAAGGCTGTACTCAGTGCCAGAGTGTCAGTCAATATTTGAGACCAGGGTGGCCTTTCTTAGAAATTCAAGGTAATTACAAGATGTAAGATGTGCAAGGGTCCAATAACTGGAACGACTTGTAGATTTCATGTGAAATGTAGCCCTTTAATGACGTATCAACTGCTCTAAGCATGTTGATTTGCATTTAGATCCCATCCTCGAACTCCAGAATTCATAAATGGGTTGTTTGAGTGCAGATGTCAACTATTTATTGTaaactttcattaaaaacaaacaagaaaacagcattttttgttCTGGTTGAGAGATGGGTTTAATGAgcagttgtttttcaaattttcacatcataattgttattatttttctaaacaagAAGAAACACTAGTATTTCTCTGTTCACACATCTGACTGGTCTTTCTTTCATGAAAACGTGGTATCATCTCTTCTTTTTAATCGATTTACTAGCTTTTGTAACCCTGTACACTACCTAAATGCTTTAGGGAGTGAACAAATCTAGACttcagaattgtattaattgtaaggCCAAGTGCAACAAAATTACAGATATCTGATATATGTCACCTGTGAAAAATGTTGTCGGGTAATAAAGATTTTAGAACTAAAGTAAATGCCAACATGAACAATTCAACTTAAACCATATTATAAACCTATAAACTGCATCACATATGTACTCTGTAACCTGTAAAAGTTACACaccatttctaattaaaattgttattgAGATGTGAATTACACTCATATATAGCGATGAGATCTGTGTAGTATTGACGCACTACCAAGCACATTCTCAGTAGTGCACTATGTAACTTGCTAGACTGGCAATACATAACAAACAAGAAACCCAAAAGTATGTTTTATGTCtttaaaagtgtgtgtctgtgtgtatatataaacgaTTTATATTGTTACACATTTGGTTTAATCCAAAAAGGTTATAAGGAGGTCTGTATAATAATCTGTAAATTTGTAATAAAAGCCATACATTGATCTCTTAACCAATATTTGTTGCCCCAGATTTGTGTGAGAAACTTTAAATAAGTCTTCTTACTTGTTCTATATGCAGATTACACTGGTTTATACGAGTAACTGTATATCAAAAGCACTGATTCTTGTCAGAGCCAGTGTCTCTGAACTGTATAACCATACgaacaaactgaaattaatttgcatatctGCAATGAAACCTTTAATGTCCCTCTGTATTGTCTGTGTTCCCCATTCTGCTCAAAGCAACGTGCATTTGAGTGTCTGTAATTTTTGGAAACACTGCCGAAAGTGTTGGCCTCTTAATGATTACAATCACAGCCGGTTTTGAACTTTGATCTGTCCAACAGATTAGAAGAGTCCCTGGTGCAGATAAATCCACAGCTAAACATTGTGTAACTGCCTCCATTTGTTTCCATAACTCCCTACTACTACTTAAATCAATGAATTGGGACATTTCTTTTGTAACTAATATTATGCCCACTTTTTCAGAACTGGATAAAATGTAATCTCCAGTGCAAGTTCTTTCCAGAAAATGTCTGCTTCACGTACACTATCATGTGAATTGAGCAAATAAGAAGAGAATTACCCTGAATGGAGGAACACATACTTGCTGATATTTAATTTTGCTGATGGAAAAAATAGTTTGTCATAAAAATGGGATGCCCCAGAACATGCAGGCTTGTTTATCAGAGAGCCCAATTAATGTTAATTCAGTAGAATGTATTTCTCTGAATTAGCTTGTAGTTTGGTTATGAAAGATTTGTTGGGGCTAAAAATGggagggttaaaaaaaaatgtatatagacGCAGACACCATTACTAAATGAAGACCACGTATGATCCAGCCATGATGGCTCGAATTGCAAAACTCTTTTGCATTGAAAATGAAGTCTTAACTACATGCTCAAATATTGGTATGTAATCAAAggcaatttaattacatttataggTGGATACTGATTTAAATTTTATCtagttaattaaataagctACACTGTCAAACAGAAATGTAGATCAATGCACTGAAATGAATGGTGGATCAGtaattgtctgtttttatttacaaagccATATATCTTCCTTCAGTTGCAACTGGTCAAGTCTTCTAGACAATGTGGCTATATCGATGGTTTAGTTATGGCTGACGGTAGaacatacaaaatacactaGAAACTTCTAAATCGTATTattcaacaaaacaatatatagggttgtatttatacatatcataaggttttattcttttatttatttcttagcagactcccttattCCAGATTACTTTATACCTTATAGTAATTCCTTAGGTTTTCTGTTCTGAGCAAAATATGGATTTCaagtgatttttttgtgtgtgtatatgtaagaATGTAGATGAACAAGCACACAAGAAAATGCAATCTTTTTTGGCAAGGCTATAGAGacaaaaatgtgactttttgtttgttcattggTACGTTTGTTTTAAAGATCAAATGATAAGAAGGGCACGGCTTTCCTCTGCTAATAATCCTGtaacaaacataacaaacacaCGTTTGAGACAGATGTGTCCTCTGCTCAGGTAAATCTGGCTTTGAACTGCAAAGAACTtgcaaaaatgcagtttaaagtgTTGCTTAGTTAGACCTTTCTGTGTTTCAtgtgtttctctttattttgtattttaacttttgaaTTGTTATTGCTCATTTCTGCAGCTGTGTGCGTcttctgagtgtgtgtgagtgtgtattttcatacatatatatactgaataGGCCGAGCCTAGTTTACTGCTGTATTGCAACACTCCGGAGACATTCAGGGCTGCTGTAACACTTAGGCAATACCTACAGCACTTATCTGTTCTTGTATTAAACTCAAGCTTGCACCAAAAACAGTGGATTATGAACTGCTTTTGATATCTGCAGTTCACTTTCAGATATTTCCAATGTTTCCATAAACCACCAACCATAAAGAAACCAAGCAAAACGACAAAAACAGATGGTGCTGTTGTACTGGTATAACGTTGATCATATATAGATCTATAGATTTTTAATGCTAGGTTAAAAGGAACTACTGTTTTACACTAGGAAAAAAATCTGCTGGCTTTAACAACAATTGTGCAAATGGGGTGAGTAGTTGCAGTCGGGAGATGGcgtgcttgtttgtgtgtgtgtgttgggg

Function

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75725 lncRNA downstream 227091 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 999172 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1104146 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1310545 6487309 ~ 6489377 (-) True G60356
TU75491 lncRNA downstream 1333336 6463548 ~ 6466586 (-) True G60348
TU75818 lncRNA upstream 42595 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 234203 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 983562 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 988558 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 996614 8807020 ~ 8809893 (-) True G60730
AMCG00020051 mRNA downstream 1983 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020043 mRNA downstream 13930 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020038 mRNA downstream 230317 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020039 mRNA downstream 284231 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020033 mRNA downstream 346847 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020054 mRNA upstream 71414 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020055 mRNA upstream 243413 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020057 mRNA upstream 279899 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020058 mRNA upstream 323775 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020062 mRNA upstream 491857 8302263 ~ 8305952 (-) True AMCG00020062
TU75693 other downstream 237330 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1328488 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1333336 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1333336 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1346324 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 1003853 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1028805 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2945062 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3885285 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4673963 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037104 True 3055 mRNA 0.50 7 NC_007132.7 4256291 ~ 4304945 (+)
grasscarp (Ctenopharyngodon idella) CI01000187_00566186_00582768.mRNA True 4502 mRNA 0.44 7 CI01000187 566034 ~ 584748 (-)