RNA id: AMCG00020051


Basic Information

Item Value
RNA id AMCG00020051
length 1660
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00020051
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7792298 ~ 7797939 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCAAAGCTCATTAGCTGAGCTAGATAAGCTGGTTTGAAAGCGCCTGCTTGTGGGCTGTGCGGGGAGACAGACCAGGTGAGACGCATCTCTGAGCTTTTCAGCCATGGATTTCGTCACAGACGAGCAGGTTCACAAGTACAGAGAGGACGGCTACCTGGTGCTGGACGGCTTCCTGAGCCCAGAGGAGTGCGATGCTCTGCGGGAGAGGATGGCGGACATCGTGGAGGGGATGGATGTGCCTCAACACTGCAGGTTGGAGTTCTCCACTGACCACGATGAACAGATCAAGTCCCAGGGGAGTGCAGACTATTTCTTAACCAGTGGAGACAAAATCCGATTCTTCTTTGAGAAAGGAGTTTTTGATGATAAAGgagactttattttgaaaaaggaaCGCTCTCTGAACAAAATTGGACACGCACTACATGCTTATGAACCTCTTTATAAAAACATCACACATTCTCCTAATGTCCAGAATGTGGCCAAGAAGCTGGGTCTCAAGCAACCAGTCGTTTTGCAAAGCATGTTCATTTTTAAGcaaccTGAGATTGGTGGTGAAGTGATGCCCCATCAGGATGCCACCTTCCTGCACACGGAGCCCCTGGGCAGAGTGATGGGTTTCTGGATTGCTCTTGAAGATGCCACCCTGGACAATGGCTGCCTGTGGTTCATCCCAGGGTCTCACCAGAATGGGATTACAAGAAGAATGGTTCGCACACCCAAAGGGACAGATTTCATCGGTAGAGATAATACCTATGAAGATAACCAGTTTCTCCCGGCTCCGGTTAAGAAAGGTGGCCTTGTGCTGATCCACGGGGAAGTGGTGCATCGAAGTGGACAGAACACATCCCAACGGTCCCGCCACGTCTACACCTTTCATGTCATGGAGGCTGAGGACACACGCTGGAACCCAGAGAACTGGTTACAGCCCACCCCCGAGCTGCCCTTCCCATCGCTCTATACTTAAACTACCATGAAAAAAGCTGGCGCACGACCCCTTCCTCTGCATACAGTGTGGGGGGGGATCCTGATTACAGGCGAAGACAGGACGTGAGGAAGGGGAGAGGTACTTCATAGTGAAAACCACCAGTTATCTACTGTCTTAAGTGGTGCTTCACAGATGCAGCATTCCTCACAATGGACCgaccaaaaataaattgtacaattgatttattaattccttacatttttttaaactctgtTCTTGGACCAAACCGAATATACCATGAAtgtaacaaagaaataaaaaacaaagagttCAGAACGTTttcaattgaataaaaaaaatgtacccaAGTAGTTTGACTTGTGCATGAACTTCTGCACTTGTTATATAAGGAAGCAATACAATATGGTTTGGGAAACATTACACATTCATAAGACAAGGCCATGCTGTGATTATGAGGTGTAAGGCTTACATGCTAATTGTGACCAAGTTGTGCTGGgaatacataaaatatcagttgctataaagaacaaacaaatccttctaaaaaatacataaatacaccaCTCTATCAAAAGGTCTGTGGGTATGTCGATTGACGAATGCAGAGagtgtgttattaattattgtaaaatatcaaGTTTTTATCTATTTGATTGCTTTAAAAGGTTACCCAGCATATGCTCTCAGTGGACCTTACTTTAGACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75725 lncRNA downstream 219467 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 991548 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1096522 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1302921 6487309 ~ 6489377 (-) True G60356
TU75491 lncRNA downstream 1325712 6463548 ~ 6466586 (-) True G60348
TU75818 lncRNA upstream 55062 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 246670 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 996029 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1001025 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 1009081 8807020 ~ 8809893 (-) True G60730
AMCG00020043 mRNA downstream 6306 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020038 mRNA downstream 222693 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020039 mRNA downstream 276607 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020033 mRNA downstream 339223 7445481 ~ 7453075 (-) True AMCG00020033
AMCG00020034 mRNA downstream 347804 7429012 ~ 7444494 (-) True AMCG00020034
AMCG00020050 mRNA upstream 1983 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020054 mRNA upstream 83881 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020055 mRNA upstream 255880 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020057 mRNA upstream 292366 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020058 mRNA upstream 336242 8134181 ~ 8134951 (-) True AMCG00020058
TU75693 other downstream 229706 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1320864 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1325712 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1325712 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1338700 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 1016320 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 1041272 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2957529 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3897752 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4686430 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile