RNA id: AMCG00020054


Basic Information

Item Value
RNA id AMCG00020054
length 4866
RNA type mRNA
GC content 0.43
exon number 25
gene id AMCG00020054
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7881820 ~ 7927867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACACCTTCTGATCAagtgtttctgttgtgtttcagGTCATTTCTGCACTTTCAAGAATCTCCCATCACAGCATTGCACAGATTAAAGGGATCAGGCCTTTTCCATCGGAGGATACTGCCCTGAACGAAGATGATGTCTACAGGAGTTTGGAAGAGTTGGCAGATGAACATGATGTTGGCGAGGATGACATCTACGACTGCGTGCCGTGCGAGGACGATGGAGATGATATCTATGAGGATATCATTAAGGTGGAGGTGCGGCAGCCCATGAAAATGGGAATGACAGAAGATGACAAAAGAAACTGCTGCTTGTTAGAGATTCAAGAAACGGAGGCGAAATACTACAAAACTCTGGAAGACATTGAAAAGAATTACATGAATCCACTGAAACAAGTTCTATGCCCTCAAGAGATGGAAGCAATTTTTGTTAATCTTGAGGAATTGATCAAAGTCCACTTCTCCCTACTGAGAGCCATTGACATGACAATGATGGGCGGAGGAAACGGACTTGCTAAAATATTCCTGGACTTCAAGGaaagGCTCCTGATTTATGGTCAGTATTGCAGCCACATGGAAAATGCTCAGAAGACTCTAGACAATCTGATAGCCACGCGTGAAGACGTCAAGACAAAAGTGGAGGAATGCACTGTCAAGGTTCAGGAGGGGAAATTTAAACTGCAAGACCTCCTCGTGGTTCCGATGCAAAGGGTCCTAAAATACCACCTTTTGTTGAaagagctggtgAGTCACTCAGCAGACAGACCTGAGCGACAGCAGCTCAAGGAGGCGTTGGAGGCGATGCAGgACTTGGCGATGTATATTAATGAAGTGAAAAGGGACAACGAAAccttaaagaaaataagtgaatttCAGAGCTCTATCGAAAACTTGCAAGTGAAACTGGAAGAGTATGGGCGGCCCAAGATCGACGGGGAGCTGAAGGTGTGCTCCATagtgaacagaacaaaacaagacagGTATATATTCCTCTTCGATAAAGTGGTGATTGTCTGCAAGCGGAGAGGGTACAGCTATGAGCTGAAGGAGATCATTGAACTACAGAGTTATAAAATGACCGACGATCCCATGAACAACAGGGATATTAAAAAGTGGTCCTATGGGTTCTACCTGATCCACCTCCAGGGAAAGCAAGGCTTCCAGTTCTTCTGCAAGACCGAGGACACCAAGAGGAAGTGGATGGAGCAGTTTGAAATGGCGATGTCCAACATCAAGCCAGAGAGAGCCAATGCAAACCACCACAACTTCCAGATGCACACATTTGACAAAAACACCAATTGTAGGGCCTGCAAAATGCTGCTCAGAGGAATTTTCTACCAGGGTTACTACTGTTCAAAATGTGGGACTGGAGCTCACAAGGAGTGCTTGGAAGTCATTACAATATGCAAAATAAATCCCCATGATTCGgAGCCTGGACCCCCTGCATCAGGCCCTAAGATGGTGGCTGTTCGTAATTACCACGggaccccaccccccccagggAAGCCCATTTTATCCTTCCAGACAGGAGATGTCATTGAGCTGTTGAAGGGCGACCCTGACTCGTCCTGGTGGGAGGGAAGGCTAGTGCAGACGCAGAAGAACGGCTTCTTCCCTAGCTCTTGTGTGAAGCCCTGTCTAGATCCAAAGCCCTTTCAGCCCTTTCCCAATCGGCAGTCGTCTAGAGAACACGATTACTTTGCATACCCATGGTTTGCTGGGAACATGGAGAGACAGCAAGCCGACAACCTGCTGAAGTCCCACACAAGTGGAACGTACCTGATCCGGGAGAGGACAGCGGAGGCAGAGCGCTTTGCCATCAGCATCAAGTTCAATGACGAAGTGAAACATATTAAAGTCGTAGAAAAAGACAACTGGATCCACATCACAGAAGCCAAAAAGTTTGAAAGCCTCTTGGAGTTGGTTGAGTATTATCAAACGCATTCACTGAAAGAGAGCTTCAAACTGTTAGACACGACATTACGGTACCCCTACAAATCTCGAGAGCGGTCTACCTCCCGTGCCAACACTCGCTCCCCAGTGTTTACTCCAAGAGTCATAGGAACAGCCGTAGCCAGGTACAACTTTGCGGCCCGAGACATGAGGGAACTCTCACTGAGGGAGGGAGACATTGTGAAAATCTACAGTAAGATTGGGGGAGACCAGGGCTGGTGGAAAGGAGAAGCCAATGGCCGCATTGGCTGGTTTCCCTCGACCTACGTAGACGAAGAAGGAGTGCAATGATTGGACACGGTGGCTGTGATGTCATTCTTTCATTTCCAACAAAAGCCATTCCTTTCACAGCTCTCCGAGGGAACTCCTGAGATTCAAAGGAAGCTGTCTGCGGAAAAACACCTCGCTGGACTTGCATCAGCAGACGCATTTTAAAGTGAACATTTGTACTTCTGTTTTTGGTTGTGTATgaatctgctttattttttcaaatgagcTCTGTCAAGAAAACTGGATTTGAAGATGCACTACCcctttgcaaagaaaaagggggcgggggggaatTGTGGAGAAGGAAATTCTCCCTTTAAACAAATGAGAGAAACCACCATGCTTTGGCCAGGAATCCCCAGCATGCTATGAAAGTGTAATTTCACTTTGCTGTACAGTAATCGTGTCCTTGATATATGCAGGATCTCTGCAGGAAGGGTATtgtaattattcataatttatttaaaaattgatttgtaGTAGAgaataatactgaaaataatgttaCAAATTCTACAAAAACAGTGCTAGATCAAAAAAGGGACGTTGTATGTCTTTGCTGAGCGAATATGCCTTAGTAGTCATGGTATTGCCTTGTGGCCTGGTGTGAGGTAGACCCgggaggttgttgtttttttttaacttccagAGGAAtgctctaaaaaaaaaaaaatggtgccTTGAAAGTAGTCAAAACTCTTTAAACTCAGTTATCGGTCCTCAGTCATTTAATTTGCACAACTGTCACGGGTCCGTACGATTGGCAGCCTTTCGCGATATTTAAAGAGCATCGGTCTGACTTCACCTCTTGACACCAGTCCTTCGATGCCAGGAGAACCCGAACAGTCAAATTCAGCTGGGATCGGCCGAGGGGTACTGCATCTGCCATCCTGTGTCTGCGGTCAGGAGAAGGTCTAGGTATGCATGAGGACTCTGCAATGAACACATTTCCAAACCAAAGTCCCGATCCCTGCACTTGGAAATAGACAGACGATCAGTGCAAATATTGttgctgaaaacattttttttaggaATCCTAAATAAGAAATTTCAAAACCATCAAgaacaagataaaaaaacatatatatatatatatatgtattttatatattcagaCTTTATATGAAGAATAGAAAAGATTAGATCTACTATtatgaaatggaaatattaGATTCCTTCTTGAATTCAGAAATTATGCCGCTCTGGAGATTTCAATCATGACTTCATGCATACGTAGATCTTCCCCGTATTTGGGTAATCTGAGTGTTTTGTTCAATGGTTGAAACAAATATCTGTTGTGTGTCACGTACGCTGATGCAATGCCacaatgtatatgaatatataaggGACAAAGTGTAAGAGCATAGAAAACGTGTGTATACATGCATAAAAATAACTGAAGGGTCAGCAGGGAATTTGAGTCTATGATCTATGTGATGAAATGGCAAGGGATGCAATTACTAATGTACAGAATCACAAAACTCAAGAATTTGACCTGTGCCTGATGCACTTGATACATCGTGCTTTGAAAATGCTGAGTGAGGTCTCAATCTTTTTCAGTCCTGAGTGGAGGAGAGTTCATCCAGCAGCCAACTCTGTGATTCAGCGCATGCCTTCCCTTTGTGGGCTTAAGGTGTGCCTTGGGGTGAATGCAAGGGTCAGACATGGCTGCTATTCCTTTAGCCATAGTTCCGGGGTGTGAGTTTTTCGGCACACTTGATATCCTTGGATTCCCCATATTGCTGACCATTTTTCATTTGGATCTAACTGGTTTCAGGtgaccatttcattatttttgtgtacTTTTGTCCATTGTGAGATATATGGTTGAAATTGGcgcaatatgtattttttgtttaattttttttttgcactgagATAACAAGTAAAACCCCCTGATTAGAAAGAGGAGCACTGGACTGGAACTCTAGTTCAGTGCTTGAAAAACAAGCGGACTGTAATCAATGCCAAATTTGACTTTGGTTTCCAGACTTCAATCCCATCTCGCAGTCAtccgttttattatttttttgtgcaaGGTGCAAAGGTCCTTTGTGTGGTTTTGCCTTATTTATCTACCAACGTCTGGTGCTCTGATTTTTCTAAGTGTTTACTGGTTGTGGAcaccaaattatttaatttaagtttatttttttatatttaagagAAACTCCCAACCGCAGTGTGTTCCTGTTTCGGAATGTGACTCCAGAGGCACGCCGCACCTTTAATCTGGATCTTGACCACAGTACAGAGGGGAGGCCCTTATAACCACCCTGTTCACTGTCCCTACACAATGTCCAGTCAGCACTGGTGACAACTGTGTGATGTGCGAGTGCAGACTGAGAGTTGCCTAGGCCATACAGAGCGGGTGTATGAATGGGCAAATCCTGAAATCCCCCCAACAAGTCTCCCTGGGTCGGTTAGTGCTAAGAGCAAGACCATGTCGGGGTGGTTTGATGCTGGAAAAGGGGGTTTAGTGGCTGGTTGCATATTGGTAACCCATTGCATGTGGTTATAGATATTTTAAGTCCTGTCATTAAaacctttaaacaaaaacaatcttaaTTATGTGTACTTTTATTGAATGATCAATTTTGATCAATGGAGGTTTTTACAGCAAATAAACATTCTTTTTTTGCGTA

Function

GO: NA

KEGG:

id description
K05730 VAV; guanine nucleotide exchange factor VAV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75818 lncRNA downstream 27447 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 308989 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1081070 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1186044 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1392443 6487309 ~ 6489377 (-) True G60356
TU75879 lncRNA upstream 116742 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 866101 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 871097 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 879153 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 1052406 8980273 ~ 9017406 (-) True G60774
AMCG00020050 mRNA downstream 71414 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020051 mRNA downstream 83881 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020043 mRNA downstream 95828 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020038 mRNA downstream 312215 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020039 mRNA downstream 366129 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020055 mRNA upstream 125952 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020057 mRNA upstream 162438 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020058 mRNA upstream 206314 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020062 mRNA upstream 374396 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020061 mRNA upstream 385946 8313813 ~ 8326375 (-) True AMCG00020061
TU75693 other downstream 319228 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1410386 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1415234 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1415234 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1428222 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 886392 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 911344 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2827601 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3767824 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4556502 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038409 False 6219 mRNA 0.44 29 NC_007132.7 18021087 ~ 18262287 (-)