RNA id: AMCG00020057


Basic Information

Item Value
RNA id AMCG00020057
length 6089
RNA type mRNA
GC content 0.38
exon number 9
gene id AMCG00020057
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8090305 ~ 8116036 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTCAATTCCCCAATGAACCCTGTGAGCAGCTCAGAAGACATCAAGCCTCCACTGGGACTGAACGGGGTGATGAAAGTACCAGCACAACCCTCGGGCACCCCGCTTTCCCTCACCAAACACATCTGTGCCATCTGTGGGGACAGATCGTCGGGTAAACATTATGGCGTGTACAGTTGTGAAGGGTGCAAAGGCTTCTTCAAAAGGACAGTGCGGAAGGACCTGACCTACACCTGTCGGGACAACAAGGACTGCTTGATTGACAAGCGCCAGCGCAACCGGTGCCAGTACTGCCGCTACCAAAAGTGTCTCGCCATGGGCATGAAGAGAGAAGCCGTCCAGGAGGAGAGGCAGAGGAGCAAAGACCGCAACGAGAACGAGGTGGAGTCCACGAGCAGTGCCAATGAAGACATGCCTGTGGAGAAGATCCTGGAGGCCGAGCTGGCGGTGGAGCCAAAGACAGAGACCTACATCGAGACGAACCTTGGGATGCCCTCCAACTCGCCGAATGACCCCGTCACCAACATTTGCCAAGCAGCAGACAAGCAGCTCTTCACACTGGTCGAGTGGGCAAAACGGATCCCTCACTTCTCGGAACTGCCACTCGATGACCAGGTCATTCTTCTACGGGCAGgGTGGAACGAACTTCTAATCGCCTCATTCTCGCACCGTTCGATAGCAGTGAAAGATGGAATTCTTCTAGCGACGGGGCTTCATGTCCATCGCAACAGCGCACACAGTGCGGGAGTCGGGGCCATTTTTGACAGAGTGCTGACAGAGCTGGTATCGAAGATGCGAGACATGCAGATGGATAAGACAGAACTGGGCTGCTTGAGAGCCATCGTGTTGTTCAACCCAGACTCCAAAGGACTTTCGAACCCTGGTGAGGTAGAAGCTCTGCGTGAGAAAGTGTACGCTTCACTAGAGGCCTACTGCAAACAGAAGTACCCCGAGCAGCCTGGAAGGTTTGCCAAACTGTTATTACGGTTACCCGCCCTCCGTTCAATCGGCCTCAAATGCCTGGAACACCTCTTCTTCTTCAAACTAATAGGAGACACACCCATTGACACCTTTCTTATGGAAATGCTGGAAGCACCACACCAAATGACCTAATGAGAGTCCGGCTCGCTGACCCCGAGCTGTGGACAGGACTGGTACCtcccaaacacagacacagactatTGGATGAACGCAACACAGAAAGCTGGACCtccctgtttgtttcttttgcgTGTGTTAAAGGAGTCAATTTCATAAAGTCTATGGGTctcttttatatattgtataaatatatatctatgagagagagaaaacaacgAAGAAAAAAATATGGGACAGAGGATgtatgtaaaagtattttaggACTTTCAaaagattatataaaatatacaaataatatgcataaatatatttacatatatattatatgctgTGATTCCGATCTCATCATAGGATATTCAAAggttttggggggtgggggaatcttttttttctttttctttctggaaATAATTGCAAACCAATTATCCTCAGCATTGATTCATGTCACCACATCTGCAGGAACCAGAATACATGCAGGATCATGGGagatgtgtttctgtttacCACATTTACTTGCTCATTCGGATTTCCTTTCCCGCCCGATTGTGTCAGAATTTCACAGAAAGAGGTAAAGACGGTTTAGCACTGCTCTATTATTTGTGGAAGAAAAATGACTAATTGTAATGGCACAGACTTAAACCTTTCACCTGTTGTTAAGTATTGATTGTACATGGCTGTTGTCACAGTTGTGTTTTTCCTTACACAAGATGTGTGCTCAATATTGTCGACATCAATATTCAATTCTGAATTATCCTGGATGTTTTTCATATCCTAATACAGTAAAGCTTTATTAGTCAGGTAGTCCTGGTTATACTTCAACAGAACCAGATAAAGTATTGAAGCCATACGTCAGTCTTGtcttaaaataacacaatctcCTTCCCGCATCTTTGAATAGATCCCTGTATACAGATATGTTGTTTTGTGACTTCTCTCACATAAGCAGTTATGGTGTAGAACCTCTTCTTATGAGAAAGTGACCTTTTTCTCATTCGTGGCActtattgaatatttaattatcaaGCTTATTAATGAAATAACAATACAGTTGGCTCAGTTAACAGATGTTTTCTGGATGGATATCGCATGGCCCAGAATGGGAGCACTTGGCTTTGTTAATGGGCTAGCCTGGAAGCAAATCAGCCCTACTAGTGCACAAATAAGGAATTCACAACATGGAAATTAGTGGGCACACTTCTGCCTAGACGTCAGCCCCTTCATGTTGTATGCAATAGAAACCCTTGTGAGAGCTATGGAGTATCTTTTAGGAACCAGAAAAGTAAGAAAAAGAGCATCAGCTATaatcaacaaacacaaatcatcaCAGTTCAATGCACAACACAGCCCTTTTTAAAAAGCCTGCTTCGGAGTTTTTCAGTAATTGTTTTCAGTCTATGTatcctattttgttttttaaatatgtatgttttttgctGTTGCAATACTATGCATTTTAGCATTTCCAAAGATTTTCCGATGTAGAATATTTGTTCTACAGTACTAAGCTGGAGGAACTCCTTACTATCCAAACATATGAAAACTCAGCCTGATTGAAATGTTTCAGTGCAGCAAACCATGTCCTCTAAAAGAGATCGGCAGACTTCATTAAATACAGACAACAAACAGAGAGAGCTGTTGGAATAGCTTTAGCTGCCCTCTTGTGGCAGGAAAAGAGAAATCAATTTTACTtgaatttttaaaatttatttaatCAGTAAAAAGGCACTTTCTTCAAGACACTATGAATGGTTTTGTAGTTAAAACCATCATGTCTAAATATACTGATTCAGACAAGTTTAACGATTTAAGTACAACTCTTTAGGTACTGAAAGAGTTCTGGATTTGGGCGTCTTCAATTCAGGAAGGGATCCAAATAATAACAGTGCTAGAAAGATTTTGAATGTTGTGACCTTAAAGATGGCAAATTACTTTCAAAAACGTagtttgtctgtatttttatgattttgtaagTTAGTTTGACTGTACATAGAGTTTTTACAAATGTCTTTTATCATCAAAAAGAGTATAAGTGGCTTGTGCAGTTTTGTTCACTTTCTCGGCTGTGTTATATAGCACACTCAAATATTGCTGACTTTGAGCCATTCCAAATCTgcagtatttttaataaaataactggtATTATTCATCAGTTGATGGGAGTTAGAATATGTAATTAGTGGGTTAACTGAATAGCAGTTTTGAAGCTCTGAATTTAAGGAATGGTTAGAATACTTTTCTCTCGAGTCATACTGGTTTCGTCCAGAATCAATTCCCTTTGTTACAGTTAATGTACAGTTTCATCATCAATTAGGAACAGCCCTTGTAACTACTGCTAAAAAAATCCTATCACATTTTGTGTTGCCGTAATTACTGTGCATGGTTTTGACAGGAGTGTTAAAAGAAACAGACTGGAAACACTTGACTGCTGCAGAAAAGAGTTTGTTTTAGCTCAGTCATTGAATTATACTATACAgtaatatacaaacattttattttactgctgtTTTTCCTTAAACTTAATAAACTACAATGTTTTCACCATAATAACAAGATACAATACTATTATCATACGGGTGTAGTTCTAGTTTATTGTGTACTAGtggaatatgtttttaaactatCATCTATGGATCTTTAGGTGAAAATTCCCCTTtttgagaaaaaactaaaaacattaatGCATGAATCTAGCTAtttcatacttaaaaaaaaaaaaaaacactatgcGCTGTCAGACtcgtttttattttccaaagttgATCCACAGCACTCTATGCAAAGACAGCTTTCCCCACCTGGTCGCTATGCAATAATCGACTGACAACATTGGAACGAACAGGACTGAAATcactgaaatatgtatatttttttctttatacaacTAGGTGGTTTATTCTGTTGATGTTAAGTGTAACACAGTCTAAATCTGGCAGAggttaaaagcattaaaaaaaatgttttttttttgctctcctTCATTTCAAATaccaaattacacaaaacacttGCGTATACTAATAAAGACTGTAGGTTTCCTCCTTTTACACACCCAAGGCCCTGTTACAGTGAACCAGATGTCAGGATGTTTTGTACCTTTGTCTTTTTCGGTTTGATTGAACAGACTTTTGTGCGTCTCTGATGGTGACACAATTTTGCTGAATGTTTTGGGGGTTTTCTCGGCAGTAGTCCCTAAGATTGAATGATTTGTCTCTGGAAATGAAGTGGTAACCAGTTAGAGAGTACTAATGTGTAATTTCCTTGACAAATCTGTGCAttatctatatacactcacGTTCAACTGCATTTTTAGACATTAGAACACAAAAAAGGCTTTAGCACAGATTTCTAATAAACGCCCTGAAGTAAAAAGCCATatgcagatattttaaataatcaagaTGTGTAATAAAAGGAGGAATTCTCTCCTGCAAGAAACAGACTTGAAATTCTGATTGACTGGAGAATCAGTCTTGCTCAGAGGTCAGAAGtgtcattcaaataaatgagaaaaatgctttatatatacCATAAAGCTATATTttgtctatatgtatatgtgtgtatatttaaatataaatataatcgTTTGTTTAATGTTACTGATTTTATCTAGCAACAATGAGAGGagtaagtaattaaaaacaaggcTAGGTCAGACCTCCACTCAGATAAATTGGAGCAATTACTGATGAGACGTATCGGCTTAATATTGCGGACCAGCCTATCTTTGTACTTTCTGCTCCAAAAAATTGCCAGCAAATGTTTTACCAGCAGCTTTGAACCCCAATAAATGATCATACACCAgcttttaagtttttattttgaacaaaaaCCTTTCTAACGGACTCCGTGATGGAGGGGAAATACGGAGATCAATGTAGCAGAAAACAAACgcagattaaaaagaaaatctaacgAGAGACCATTAACCGAGTGACCATCATTGTTGGTTCACCGAACAGAAATGACTCTTAAGTGACAGCTAtgtatcagtttgtttttgaatggaaCACCTCATGACTTGCTGGGACTAGCAGCTGTTCCAGATCATACCAAGCATTGCATGCATGTGTTCACATACTTTTTGCCTGTGGTCCACAAATCTTGAGATTAAAAGGTTTTCAATTAGCCAcaggtaataaaaacaatgttcaaAATTCTCTCTCACCAAGACCTGACTATACTCCTTGCATtgctattaaacaaaaaaaataatattcatgaTCCATTCAATAATATACAATCCCAAATATAGTTGTGGAAACtataaaatcattaatatttCTTTCGGATGAGTTAGTGGAGATGTGTTTTATGCTGATGGTCAATACTTACTTTTACAGCATTTCAATCCCAAATTGTCCAGTATGTTTAGaattgaataaaacatgatCTTCACTTGTAAATTCTTGTTCAAATTGGGGCTTACTGCCAATTGTCATCCTTGCTTCTACATAAAATGTACACCGAAGGGAGAGGCAGATCAAAGACAGGTATTAGATACCTATTGCTTGTGGCCTGTGCATCTATTTTCAGATGCTTGACATCCAGAaaggttttcttgtttgttttttgttttgtttgtttttgcagtaaaTTTAGTCTAACCCAGTGTGTAGTTATCGCCTTAGCAGTCGGAAACAAAAACGACAAGAAAGGATACatctaagaagaaaaaaataataatctatttttgtacaaatgtaattttatccCTTGCCTATATATTCCTaatgtttctttcctttccttctaTGGActgttgtatacattatttgtgtaaatgttgatcttaaatagaaataaaaaaacaaaaccttgaacAACATGAGGGGAGTTGAGAAGGGTAAATTggtaccccccccccaccccctgtatTTTGACATtcgtttttctgttttctctagAGATAGAGGAAGAGTTCTGTTCACCCCTGCAAACAAATCAGTATCCCCGCAATTTTAGAcatgtcatgtttttcttttttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08524 RXRA, NR2B1; retinoid X receptor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75879 lncRNA downstream 43064 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 235932 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 517474 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1289555 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1394529 6679178 ~ 6695776 (-) True G60377
TU75964 lncRNA upstream 677932 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 682928 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 690984 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 864237 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 1041891 9157927 ~ 9160733 (-) True G60833
AMCG00020055 mRNA downstream 18375 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020054 mRNA downstream 162438 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020050 mRNA downstream 279899 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020051 mRNA downstream 292366 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020043 mRNA downstream 304313 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020058 mRNA upstream 18145 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020062 mRNA upstream 186227 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020061 mRNA upstream 197777 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020066 mRNA upstream 696749 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020067 mRNA upstream 738780 8854816 ~ 8876263 (-) True AMCG00020067
TU75693 other downstream 527713 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1618871 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1623719 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1623719 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1636707 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 698223 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 723175 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2639432 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3579655 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4368333 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037389 False 1380 mRNA 0.53 9 NC_007132.7 17880511 ~ 17944808 (+)
grasscarp (Ctenopharyngodon idella) CI01000006_08797043_08827629.mRNA True 1827 mRNA 0.52 11 CI01000006 8796836 ~ 8827686 (-)