RNA id: AMCG00020061


Basic Information

Item Value
RNA id AMCG00020061
length 4747
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00020061
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8313813 ~ 8326375 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGTGCTGGCGTTTTATTATGAAGCTGCAGTTTAAAGATGACGTGATCTGTTTTTGAGAGGatatttaacaatacaattCGTGGatatgtgtctgtatctgtagTTTAAAGATTACTTTACGTTACTAAGTATGCCGTGAACTGAAAGCATACAGTTTCCTTTCCTCTGTTCAAGGCTGTGAGAGTGAAAGCAGATATTCTTCAGGAGGATACTCAGCCTCTTTCATTTCAGGAGAGAAAACCTCTGGAAAAGGGACTGCCATGTTGGACTTCTGTAAAGTGGGAGGCTATCCTGTCTATGTCCTGTGTCTGCTGCTGATAACCTATCTACTGAACCAGCTGGACCGGTACATTCTGGCCATAGTCATCTTGCCATTGGCGCAGGAGATACACTTTGGGGACAAGAGTTGTCTGTCTAACCGGACGACCAGACCCGGCCCAGAGCTGTGCAACAACGCCAGCAGCGACAGCCAGTGCGTCTCCTTACTGAACTCAAACGGGACACCATACTGCAAATGGGACTACAATGGCAATGGATGGGAGTACCAGATTATGGCCGGGCCCATTTTTATCCTCATCTATACGTTTATGGGTATTTTTATTGGATTCCTTGCTGATGCCGCTAATCGAAAGAATCTATTGGCCATTAGTCTACTGTTCTGGAGTCTCATGACTTTCCTGATGGGATTTGTCTGGGAGTACTGGCACCTTGTGGTGCTGAGGGAGGCAGGTTGCACCCCCTTTGCAGCCAGCTTGATCGCAGACTATTTCCCTGAATCTGCCAGGGGTTCGGCCATGGGCTTCTACAATTGGGGCATCTACACCGGATACAGCCTGGCTTTTGTAGTTGGAAATTATATCACCAGGGCCAACATCATGGGCATGGGCTGGCGCTGGGCCTTCCTGATCTGCGGGTTCCCGGGCTTCGTGCTGAGCCTGCTGGTCTTTGTGTCAGTCAGAGAGCCGCCGCGCACACAGAAGGCCACCGAAGGAGGACAGAGCGGGAACTACACGTCCAGCCTGTCGCTGTGCCACAGATTGACACCCACCCTGCGGCCATTTCTCAGCCCTtccctgctgctgctctgtCTGGCTGGCTCTGTCAGAAATGCAGGTGGCTACGTGTGGGCCTACAATGCCCAAAACTACTTCAACTTCTATTTTCCCAGTGAGGACGTGGGGCGGTGGTTATCATGGATACCGTTAGTCGGTGGCAGTGCCGGTGTCTTGTTTGGTGGATTCATTTCTGACAGAGTGGTAAAGAAGAGGGGACTTACTGCCAGAATATGGGTATTAGTTATCAGTCAGATGCTGGCAGCTCCCTTCTTGTTCGGTGTGCTGTGGCTGTCCCCCCCATATTGCTTTCTCCTGCTGATTCCAGCTAACATCATTGGGGAGATGTGGGTCGGCGTGACTCTAGCCATTCTGGTGGAGCAGGTTCCTGCCAGGGTTCGCACATCTGCTGTGGCCTTCTACCTCTTCATCATCAACAACATCGGAGGAAATGCGCCTCTCCTTGTGCCCCCCCTCAACAACCTGTACAGCTTACGCGTAGCTCTGTTTATACTTTTTCCTGGAACATATGTAGCCGggTCTCTGCTGTTCCTGTTTACACTTTGTGTCACACGGAGAGACCAGCGTAGGATCTCTGGAGAAGAGTCGGAGCCGTTGCTCCAGGAGACGGATCGGGATTCGCAAGAgcacaaaaaaagcacatgatCCGTGCCAGGCTTGTGTCAGGAAAAACCTAGGCAGGTAGACTGGATAGGCAGGTTGGTAGGTTTCACATTTAGATGCCAAAAATATTGGCACTTTTCTTTAGTGGTAGTTTTTTCATCTCCAAATAAAGATTCTGTCATCTCCTAAAAGTTCAATCAAGTGAAGGTTTCTGCCTATAGAAACAATCCGCTTTACTgcatcaaaacaataataatgttagcaGGAGATATTTACATAACCTGACACACATTTTTTGACAACTGCCTCACAATCTTTTATGTAGTCCCCCTTCTCTAAATTGGTTCAGTTCTTATTTATCAGATCGTTATCAGTACGTGTCTTATGCTGGTTATAATTCCACAAATTCCTGACTAGTTCATGGTGTCCCACAGGGCTCTGTTCTTGGACTCATTTTTAACATCTATATGCGGCCACTGGGTGATGTAATTTGAAAGCATGGTGTTCAGTTTCACTCCTATGTAGATGATACACGGTCAATTCTGACACTTAATTATACTAAGTCTGAGTTACTGGTCATTGCATTTAATACCAAGCTCTGTTCCTTTCCTGGGTTATCAGAGTTTTACACAGTACTTCTCAGCTTAGGTGTCGAATTAGACTCTGGGCTCTCatttgaaaaaacatatttcctcAGGGTTAAAGTCTGGGTTTTATCATCCTAATTAAATCTCCAGAGTTTGTCGTTTTCTGTGTCCTAGAGATACTGAGATTCTAAttcatgcttttgtttcttcctgATTGGACTACTGTAAAGCACCTTTTGCTAACCTTCCTGCTTGTCTTATAAATTGATTGCAGATGGTACAAAATGTGGCAGCTAGATTTTAACAAACACTAGGCGGTCAAAACACATTACTCTGGTTCTCAAACATCTCCATTGGCTCCCTGTCCATTACcgcatttattttaacatagtGCTGCTTACATATTAAGGTTTATATTCCAAAAAGACAGCTGTGATCTTCAAGCGCTGCACTCCTACAACAAAATATCCCAAAACGCATCACACTTGGTGGGCATAGTTTTAGTTGTCACTCCTTCCCTGTGGAATTCCCTCCCAGATTTAATTAGAGATTCTGACACAACTGTTCCTTTTAAAATtgcactgaaaaacattttgagtcTCTACTGCATTTGGTtctctgtaatgtattttattgtattttaatgttttctacaattatgtatttaaatggatcttctgcttttgtgtttttgtttttgacttgtaaagcactttgagcCACTTCAGTGTGAAAAGTGCTATAATcaataaaagttattattattactttattttacacaggATTGAACAGGAATACTGGCTCAAAAAGTGTATACACCACAGTGAATGTATTGTAATCCCTAATTTCCTCAGAAATCTTACATATAATTCTCTTGCATTTCCTGTTCATGAAAATGGGCAAAATCTTGAAAATATTCCAGATGTTAGGCGGGGTCCAGCAGCTGCTTCAAAAGCATCTGTGCCTTTTTCATCTTAGCCCACTGACCTCCCATCCGCCTCTGCTCCCTCTTCAGTGTAACGAGTATCTGTCAGACAGTAGACACAGACCCTGTTACCtccacagcacagctcttttTAATCAAAGATGTGAATAGAGGTGGCACCAGAAGCTCAAGAAGCAGAGGGTTAAATTAAGTTTTTAACGCAAAGCTTTAAATCGAGTTCGCTGCTCTCTAAACAGCTTTTTCTCTTGAAGAAGATTAAGAAATTAAGCTGAGCAGTGATTAGTAAGGGTTACTGCTTGAGAGCAGATTGACGGGTGTGACTCAGAATGTGAGCAACAACGAGCTGCTCTATTCCCACTTCATGGAAAATGTACTTGTTAGGACTTAATAATGCATCCATTTACAAACCTGCTATTATACAGTCCTGATGAGCCACATTGTGGATAAGAAAGAATACACCTGACCAATCAGCTATCAGCTTTACCACAaaactttgtaatgtttaaattacatttattcataGCACTAATCCATAGTTCCACTTATCGATAAATGCATGTTGGAAGGAACagtgaaaatattaacattCTTTGGAAAGTCGTGCCAGTGTTTGTGTGGTAGAAAGTGGGAATTCAAAAGCAATGTGAAATTAGGTTAAGCCTAAGGCAATACATGTTGTTCATGGACAAAGTGCCAATTTCTGATATACAGTCATTAAGAGTTCATTTCCAAATAAGTATCAATCAAGGGtcttaaaaagacaaaataaaacttgtattgtaaaacatattaaGCACTTGATAATTTTACGTGAGAAAAGAGCAACTGAAATGAAGGCACTGTTTCCTgctattttgttatgtatttgtccaagattattttggtttaaaatattgatacTGATGCTGATAAATGTTCCAATGGTCAGATAATTGAGTctttaatgaattaaatgaacttttcatatgtgtgtgtatattagtTTCGCTCTGTATGTTTCGCTTTATTGTAAATCCACTGGACTGTGCTTATGTACCAAAGACATTTGACCTCCAATACTTTCTGGTAGAGCTGCCTTTTCTtggatttaaaacatattctgaAGTAAAACCATTAGAAAATGTTTGTCTCTGGCAATACTTGGTTTTGGAATCCTGATATGTAATTCAGAGACAGTACTCTTTGACAAACCCATAGAACAACACTCTCATTATGTACCACTATATTTTGTCATGATTCTCCTTTTCATTAAGAGAAGCCAGcaaatgtcttttaaaacatttaataaaatatgtctgCTTTATTATCCAATATTGTGGTTAGAAAATTGTGGCAGCCGGAAGTggccatttaaaatatataactacCTACGTACAGTATGTGTGACCAGATtgaattttacttaattttgtattaatgtgagCTGTCTGCTTTCAACATGTTAGTGCAGATGTTGTTTTAAGCATGGGATATTGGGGActtgtttatattaaaagatTATTCAACTGCTGTTAATACTAAGTAGTAAATGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75879 lncRNA downstream 266572 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 459440 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 740982 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1513063 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1618037 6679178 ~ 6695776 (-) True G60377
TU75964 lncRNA upstream 467593 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 472589 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 480645 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 653898 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 831552 9157927 ~ 9160733 (-) True G60833
AMCG00020062 mRNA downstream 7861 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 178862 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 197777 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 241883 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020054 mRNA downstream 385946 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020066 mRNA upstream 486410 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020067 mRNA upstream 528441 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 638186 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 695448 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 751365 9077740 ~ 9083125 (-) True AMCG00020077
TU75693 other downstream 751221 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1842379 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1847227 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1847227 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1860215 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 487884 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 512836 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2429093 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3369316 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4157994 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile