RNA id: AMCG00020062


Basic Information

Item Value
RNA id AMCG00020062
length 366
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00020062
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8302263 ~ 8305952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTCAGTGACCCCTTTGTCTTCTCATCCTCTCAAGCAAATGGACTCCAATGCTATGGCTGCAACATCATTGTCGGGAGGAAGTACGTGGACGTGGGCTGCTCCAACCCGGAGGTCATCACCTGCTCCCACTCACACAAAGGATTCAAGCATCGCTTCTGCATTAAAACGGAGAGCACGGCGCTGGGAATCCTTCTGACCAGCGGCTGTGCCACCTCTCGCCACTGTCACCAGCAGGAGCTGCCCGGTGTGAAGATCCACTGCTGTGACTCGGACCTCTGCAACGGCTCTCCGCAGCTTTGCGCCCGCCTCCTGCCCTACCTCTGTGGGCTCCTCAGCCTCATTCTAGTTCGGTTTCGACTATag

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75879 lncRNA downstream 255022 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 447890 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 729432 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1501513 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1606487 6679178 ~ 6695776 (-) True G60377
TU75964 lncRNA upstream 488016 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 493012 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 501068 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 674321 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 851975 9157927 ~ 9160733 (-) True G60833
AMCG00020058 mRNA downstream 167312 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 186227 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 230333 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020054 mRNA downstream 374396 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020050 mRNA downstream 491857 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020061 mRNA upstream 7861 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020066 mRNA upstream 506833 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020067 mRNA upstream 548864 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 658609 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 715871 9021823 ~ 9049768 (-) True AMCG00020078
TU75693 other downstream 739671 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1830829 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1835677 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1835677 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1848665 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 508307 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 533259 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2449516 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3389739 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4178417 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile