RNA id: AMCG00020067


Basic Information

Item Value
RNA id AMCG00020067
length 6942
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00020067
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8854816 ~ 8876263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACTTTGGGACGAGTTTAAAAGTCATCGAAACTATGGAAGAGTTTGGTAAAGCGCCTGCCAGCTGGTTGGTGTTGGTGTCTATGGCCGCAGCTGTTAGAGGCCAGAGGAGCGCCCTGCACCGGGAGCACATCGAGGTAGTTGCAGCTTCTGGGCTCCGAATCGAGACAGCGGGAGACTGATCATCGTCCTATGTGCAGTGCCTGAAGTACcagccgagagagagagacaggcaggcagaaaTGTACCAATCTCTTCTCCTGCTGACCTCTGCCCTGCTGGTTCTCCCAGTGTCCTGCAGCTATCACTTCATTCAGCCAGGACGCCGGGTGTGTAGCAAAGATGTGCCCTACCCGAACCCACCAATCTCCTACACAGAGTCCTTTGTGCAACCTGTGCATAAACCCTACATCACACTATGCCAAGGACACAGGCTTTGTAGCACCTACAAAACCATGTACAGAGTGTCCTATCGACAAGTAAGTGCGTCGGTACCACATGCCTATCCAGAATGCTGTCCAGGATGGAGGAGAGTCCATTCACACAACTGTAACCAAGCCATTTGTTCAAAGCCATGTGTGAATGGAGGAACCTGTGTGAGGCCCaaccagtgtgtgtgtccctcagGGTGGACTGGAAAGCAATGTCAAACAGATGTAGACGAGTGCAGTGGGTCCCACTCCTGTGCCCAGCAGTGCGTCAACACTATTGGTAGTTACCAGTGTGGGTGCCAGGAAGGATACCAGCTGGGCAGAGACGGGCTAGCTTGTGAGGCTCAGGAGCAGCCCATCACCCATGACACCAATAACTATCTCAAAGCTTCAACAAACAATTCAGATGGAGGACCAGGGTCTTCGGAAAAAATGTCTGAAGAGGTGCAGGACCTGAGGAACAGAGTGGAGCTCTTGGAACAGAAGCTGCACCTGGCTCTGGCTCCGTTCAACAGCCTGTTCTCTGTGGCGTCGGAGGAGGGGGTTGCCGAGAGGGCAAGCTTCCTGTCTCAGTCCTTTCAGCAGCTGGATCGCATCGACTCCCTCAGCGAACAGATCGGCTTCCTGGAGGAGAGGCTGGAGACCTGTGAGTACCTGTATCCACAGCAACACCAGCCCCACAGCTCACCTAGCGCTGCCAACTCCAGACACTGCCACCTTGACAACAGGCCGCGCTCCCTCCCTTACAGGCTATAGCTCGGAAAAACGGCACGTCACCAGATGTAATGAGGTGAAGATTATCTTCATTTTGATACCCCGTTAAACAAGGACTCACCAGGATTTCAGTATCTATATTAGAGTAATAATTATTCTAAAATGCAGTTGGCATCAGAGCTCTATATGCTACCCTATGGCATCTTTCTACCATAAATCAATAGCTCGGATTCTCGGCAGCAATTTGGAATCAGCTTGTAAGGACAGTGAACTGTTAAAACAGCGAATGGCCCTTTGTGTTATCCATGACAAGTTCCTGACAGGACACTATTGACTGTTTcgttattaaatgtattaagtcGGATGTGTATTTTGGGAAACTCAAGAGTTTCCAGTAAGAAGCCGCCACAATCAAATGAAACAATCCCATTGAAAGCACCTGAAAAGCTTTGGAAAGCAGCAGAGGGAAAGCACACCATTCGAATCCGTACAATGTGCATTGCAAATCGAattaactgtactgtacagaCGTGCCATGGCGCCCGAGTAAGAGTTTATATGCTACAGACAACTGATAAGCGCTTAATTCAGAAAAGGGCTTTTCTAAGGAAATGCAGTTTGTGGAAAGCCCAGTTCGGGGACCAGGCCTGGGGAGGGGTAAAgcgacactctctccctcttatcCCCATGGCGATCTTGCCAGCCTCCACCCTCGTTATCGCTCGAGTTTCCTGAGCTTGCCACTGCACAGGGGGAACAAAAATTAACCTCGTTTCTCCTCACGATGCTACGCCCTGCACATTCACATCCTTCactagggaaaaaaaaacatgtttcgTAAAAGACGGTCGGTAGTTAggaaaacaagcaaattaaataGTCTGACAGGATGCATCAGCACAGATTGACGATGCAGAGACAGATGTGTAAAACGAGTGCTGTGGGCAgaggtgtgggtgtgtgagaaTGGAGGGGGGCACCACAACAAGGTGCATTTATTTGGCTAACAAGGAAAGGCCATGGGAACTGGGGGCTGGTGTTAGCAGCATTAATCACAGTGGAGAGGAGACAGTTTGACGCCACCAGGGGGTAGAAATTGTTCCCCCCCAAACAGATTTCAAAGCTGCTTATGCTCCATGTTGGCAGGTTTAAACCCAATACAGGAACAAAGGAGAACCGCAGTGTCTCCCACCCCTCGCCCCTCACCTTCAGTAACTTAAGTGGTGCACATTAGGGTTTACCGTTCCTATTCGTCTCGATTAATCTTACCCTGGGAGGATGGTAGCAAGGACTGTGGCTGTAAATTTCACACCCAATTTGTGCCTCAGCCCAGCATGAAGCCCTGTGAAAGTGAACAGTTGGACATGGTGCACAGGGAGGAGAGCTTTTACAAACTTCCAAAGGTATCCCTGACACTGGGTAATGCAAAAAGAAGGGCAAAccaaacgcacacaaaaaaacaaccaatttaGGTTAAGAAGAGCAGGCGAGGCCAACATTACCGTGTCCGTTCTGCTGTTCATGTCTTTACAGGACAGTAAAATGAGTAAAATCTTTCAGGGAAAATAAGGCATTCTTTCAAGTTCTGGTTGAATGCTCATTGGGGAGCAGTTTGCTCTTGTATGCAACTGCTCTACACATCTATTTACATGTACCGGTATGGAGGATGACATTAAACATAGACCAGCTGCCATTCAAAGTGGTCTACTGGCCAAGATGAAAAGGAAACATACTTCAGTCCTGGAAAAATatgaagtaaaaatacatttgcccTCAAAAATCTTTTCTTTCCCTCACCtttcttttcaaattgtatttgttacaaACAATcctatatatgtttaaatgtgagagagaagaaaattaaaaatgcaaaggtTTTGGACAGAATTTGATGCATATACTACAATATACAATGTCTAATCCTATTACACTCAACTAACACAATTACTTCTAAAAAGCAgatttttacattaatatttattctttattttttgattgtaGGCTCCTGCCGAGACAACTGATAATGGGAAACGCATAGGCTGCAAGGGCAGAGATTGGATTTCAGTTTCTGTTCCGGTCGACTGCAGTTCAGAACACCGAGGGACATTCAAATCAGAGCTTGTATTTCTCACTTGTTTGATAGTCCTTGATCCTTTTCAAGCAAGCAATACAActaattgtattcatattgGAAAAAACTCAAAGTAAGGGAATGAAAtgggagtgtttgtgtttgattgtgtgtgcgtgtgtgtgcgtgtgaagAGAATGTTATTTCCTTTCAgataagtaattaaaataagtgaCAATTATAAACAGTGGTCAATGTCccaattgattttattttaaacaaatatgatgTGTATCATTGTGTAAAACGTGTATATTTCACCCTAGTATTTCAAGACCACTTTATACTGTCATTTCTGCAGTCAGTTCTCTAATCACTGAAGCACTCACTTGGAAtttggtatttatatatttaagttataaTTCCATGTGCTTGTGTAGAGAAAGGATACATGTTtggcaatttgtatttttttttttttttttaataaaataaacttacaaAAATCTCAGTGTTTAACTTGTTCAAAGTGACAGATTTAACATTTGctattaaaaagaataataaaaatacaaatcagtcaAATCACTAGGTTGTTATATGGCTATTCAAAAGAGATCCaaactttcctttccttttttaattaaatccttgGGTAATTAAAGCAGCATGTTTGCAACAGAAACAGTAATTGACAAAAGAGGAATTCAGTCTTCCCATAGGAAAAatgaaatttatttttcaaggcaTTTTTAACAGATTCAGCCAGATTCTGTGAAATCAAGACCATTACAAGTTCAACATAACCAGATATTACTATGAGAGgttatgcatgtgtatgtatgtgtgtatatatacacatacacaaatatacacacacccgtacacacacgcacacatttcactgtatttaaaaaatacaggtactcccaacatttgtttttctgaagctACCACAAAGTCTACACTTTAAATAGCTTTGGTGAATTTATAGGATACTTTGtaaattgtacatatttaaatttcaattacattctttttttacctctgaaagtcaaaaactaaaataagtgCTGCCTTAATATTttccacaaaaaataattcacacaaACCATTTTATGCAACCACCAACCAGAACTCCCTTTTCACTGGCTCTCCGAGAGGGCTATACCAGCAATTCCCAGCAGGGGTCACGAAAGTAAgaagtgctttttattttccccaaagcTATAGTGCTACCTCTCCCCAACTTCAAACCAAAACCCCTGTAAATGGCTTTGAATAAGCAGTGTTATAGTCAGACAGAATTATGACCAACCCCCCTGCAATACTACCAGTTTACATTAAGTATTCCAGTGTTCCTCATTTACACTGTATCCCATAAATGTCTTTAGAAATGtgtgtggttgtttttcttctgtaactCCATGTCTGAATGAGCGCTCAGACTGGTTTGCAATCACTTAATGGCTGAAGTGTAGGCAAAACTGCTACCGTATCTCCTTGAATGCACTAGTTTACTGCAGCGGCCTACGTCAAAATTAAATGCTTGAGGAGGATTACTGCGAAGCTctataaactaaattaatactAAAAAGGTAATATCCAGTTACTCTGACGacgggctttttttttttttccttcttttctttgcAAGAAGCTGAGATTCACAATTTCCAATAACTAAACTGCAAATCACGGCACTTAACTCACAAAGTTCACCTCAGATTGCCTGTCAATACATAGGTATTTTTCACTAGTTCCTCCAGAGAGTATATCCCATTTTAAGTTGGTTTACTACTAGTGTAAATAATTTTGCAGCTCCAGCAGGCAAGAAACTCACAATAAAACACTATAATTGAAGATACACCTCATTTTCACAGTGTTCATAGCACATTCGATCAGGTAATTAATCGGATGACCACTGATCACAATTTACCAGAACGTTCTTCAGAATCGCTGTTATACAGCATTTGCAGATGCTTCCCTGTGACAAGCGTGTGTTCCCCACCCTTTTCGAAGTATTCCTTTAGGACTCCAATGTCCAcctcacacaaaataaaaacacagggtTTGGGATCAGGGTTGCTTCTGAACAGCAGTGTTGGTATAGAACAGCACTGCCCTGCTGTATATCCAAGTTCCCATTGTTTAATCTAACGTAAGGAATCTTGTTACTCTGCTGGAATCTGCAAAACTATTTTAGTGTTGTGAACTTCTGCTTTTAGCTCCTGAAGTTCAGTAACTTTAGTTgttcacccccacccccatagTTATTAGATATTAATTATTACCAAGATGCTAGTAAAATATGTAGTTTTTCCAAATCTCAAGATTATAGTGTATATGGGTACAGGCTGCAGTAAATGGTTCTTTACTTTTGTAGCCCTCTCGTAACTTTCCTCTCACACCTCGTCAATATCCATCGATTTGTAAGCAACACACACTAGGACAGGGGTACGTTGGAATGGCACAAATGTGACCTATGACTACCGCTGATCCAAATCAGCCTATcctgaaaactaaacaaaaaagaaaatggaaataaaaaaactgacCCGACACTTCCACGGTCATCTGAAGGAGTTTCTTCCAATGAATTGGTCAAAATAGATCAGCCTCACAAGAAAGTGAAAACTAAGTAAGTTGTCTGATGtaacccccaaaaaatatacacacattaaaataaatatcactggATTTAAGTTCCTCAAGAGATCAATGTTGTGGCAGCTTAAGCAAatatgccttttaaaaatatttaaaccacACTCAAACCTAGGTAACACCTGGGACTTTTCAGATCATGCTTCTTTAACTATACGTTTTCACATGGCACAACAGGAAATATGCACTTTGGAACAGTAACATCTGCACATTGGATATTGCACTTAATGAAAATACCTTTGACACTCTGAGACAGGTTTACCAAGAGGGGTTCTTCTAAAGATGGGGGGGGAGGGGCGTGgaagaaatataatgaaaaaatatacagtatatataaataaatgtagtataCAACTTGGGATACTTGCTTCAGGATACATGCAGTAAGTATCTTGTTAGATTTTCGAAATATGAATAGCATGTGGTACACAAACTATGCAAAACATCTGAGTAAATCTGTCCATATACatcacacagatatatatatattttttcaattttgttgtGGTTagcatttttggtgatgttaATAATTTTTACATGACTTCCATGGAAATGATGAGGAAAAAGCACAGGGAACTGTGCTGAAAATGCACAGATAAGCTCACAACCCCCCTTACTGTGTCTTCTTGGGGTATAGAAACTGGAATGTGGTCAAAAGTGGATGAGGAAGAGGGGACAGAGGGAAGTTGTAACCAgcgaaagaaaatatttttgtattttatcacttccaaatacattaaattatttctgaaacTAATATGGGTCAGAACTGGCTAGGACAAGAAACTGGGCTATGATAGGggcagaaataataaaaaaatgaaaaaaataaagcataccCATCGAGGAAAGAAAAAGGTGGACCAAGTGATCCGATGCATGCAAGAATGCACATCCATAAAAGTCTGATCAGACAATCGGGGCTCAACCACTTTGAGCAATTTTACTGGTCCCTTTAAGGTTTTGGGTACAGCAGACTGAATCGTGGATGAGTGCTCTGGTATGTCCCTAGGTACACAGAGCAAGTTAGGGGACTTTTAACCCTGACCCTTT

Function

GO: NA

KEGG:

id description
K24465 EGFL7_8; epidermal growth factor-like protein 7/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75971 lncRNA downstream 44923 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 55649 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 58501 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 807575 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 1000443 7853001 ~ 7854373 (-) True G60610
TU76021 lncRNA upstream 104010 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 281664 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 393297 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 1051714 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 1209650 10085913 ~ 10091086 (-) True G61027
AMCG00020066 mRNA downstream 27206 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020061 mRNA downstream 528441 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020062 mRNA downstream 548864 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 719865 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 738780 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020081 mRNA upstream 88298 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 145560 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 201477 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020082 mRNA upstream 239210 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020080 mRNA upstream 261470 9137733 ~ 9145085 (-) True AMCG00020080
TU75987 other downstream 14871 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 26707 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1292224 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2383382 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 2388230 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1879205 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2819428 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3608106 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3608106 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3614435 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile